RNA id: TU36617


Basic Information

Item Value
RNA id TU36617
length 1621
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G24586
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 215975 ~ 281984 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TcagtctttttcatttatttggtgaTATGTCACAGGTGACGATAAACTCACAGGAAGTTATTTCTGTATTACAAATAAAGCATCATCTGTACATAGAGACAGCTGCAGGAAATGATCCCGCACGAAAACAAAACCGATCAGCTGGAGTAAAAACGCTTTAAAAAGAGCCTGGGGgcgaaaagaaaagaaaagcaagcgAGCAAACCATCTAGAAGCATGAAGACGAACACTGAACGCGATGCATGTGGAGTTTGATCCCCGCGTCGGAGGCAGACGCATGGCTAAAGACACGGATATCTATGGCAGCGTCGAGCTCCGGGACCAGTCTAAAACCTCGGAAATATGGCACATTCACTCgaagtgagaaagaaagacaaaccGTGGTAGGAATTCAACAGTCGGGCTCCAAATCCCTCAGACTCCGGCTGCAAGACCCGCTCGGAAAGGCacgtggttttgttttttttatttaaatagttaaaccGCTGACGTGAGCACATTCGAAACATCTGATTGGACGCTGCGCGAGCGGGAAGGCGCCCGCGGGACCAAGACACGTGGGCTATGGGTGACGCCGCTTCTCTAGAAGCACGACAGGAAATCGGTTCTGGACCGCACACGGACGTTTACGCGCTAATCTAGTCTCAGACTATTTGGCTGGTCGTCGTACATCTAGTCTGACGTAACGGTCAAGCAAACTACAAAAGTACGTGACAGCATTTCCTGCTACAGGTTCACTAGGCCTAGATCTACGGTTTCCTCGGAGGAATGTTACACGTGACGCTCGCTATATACTGTACACGCCTCGGTATCGCTCCAATAAGTTAAACATTATTTCCTTCAAACACCATTTAGGAACGTATGAAATGCgggatccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcgccGTTCGAGATAATCGTTCCCGGGAACggttttaaataatacaaaatttgaCCTCGTCCTTCATTCGCTTCTTAAAATGGTCGTAAAATACAAGTAACGTCAGAAGTATTGAACCCTTTTGAGTTTCGCGTGTGAGCGAAAAAAGTTTCGGTCCCcgtatattttcatttttaggagagcatttcctttttttttcattgctataACGCGtctgtaaaattgtatttaaatcagGCAGTGCAATGAATACTATTACgtacaaatactaataaaaattttgCACTTGATAAATCATGATGATCTGTCGTGAAATGTGCTTATTTGTCACGAACGTTATAGCTAAATATGTAgaactgggttttttttgttgagtgaaatgcatattttcccTAATTTTAAGGGGGAAAGTTGACCTAGATTTTATAAAgtttgttttgtatataaacGGACGTCCTCCAGTGCAGCAGGGGGCGCTGATGGAGGgcgatttgtttttaataaaaacaaataaaccaatGGTCCAAATggttgaaaataaaatttttgaaaaataaaagtaaacagtCATTACTAAAACatcccacaatgcacttcaGTCCAATATTGGCCATCCTTTTGCAACAAAATtcctaaaatgaaacaaatagaAACCAAATGTGTAGAATAGGGATTTTGatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36637 lncRNA upstream 18035 261456 ~ 261964 (+) True G24599
TU36635 lncRNA upstream 19296 259399 ~ 260703 (+) True G24597
TU36628 lncRNA upstream 24146 253265 ~ 255853 (+) True G24594
TU36627 lncRNA upstream 27625 250172 ~ 252374 (+) True G24593
TU36599 lncRNA upstream 85816 191392 ~ 194183 (+) True cmah
TU36676 lncRNA downstream 80458 362442 ~ 362768 (+) True G24628
TU36679 lncRNA downstream 90390 372374 ~ 372853 (+) True G24631
TU36684 lncRNA downstream 92574 374558 ~ 374844 (+) True G24633
TU36685 lncRNA downstream 93941 375925 ~ 376208 (+) True G24634
TU36686 lncRNA downstream 97219 379203 ~ 379444 (+) True G24635
XM_043237775.1 mRNA upstream 66840 205505 ~ 213159 (+) True LOC122343357
XM_043237774.1 mRNA upstream 80463 195092 ~ 199536 (+) True glipr1a
XM_043236793.1 mRNA upstream 86516 184716 ~ 193483 (+) False cmah
XM_043237828.1 mRNA upstream 172694 90208 ~ 107305 (+) True frs2a
XM_043236241.1 mRNA upstream 190847 87026 ~ 89152 (+) False yeats4
XM_043236781.1 mRNA downstream 61608 343592 ~ 360922 (+) True zdhhc17
XM_043236911.1 mRNA downstream 152359 434343 ~ 439352 (+) True gpr22a
XM_043236912.1 mRNA downstream 152359 434343 ~ 439352 (+) False gpr22a
XM_043236913.1 mRNA downstream 155199 437183 ~ 439352 (+) False gpr22a
XM_043236972.1 mRNA downstream 578612 860596 ~ 863551 (+) True LOC122342832
TU36577 other upstream 195037 83688 ~ 84962 (+) True G24555
TU36656 other downstream 11251 293235 ~ 295069 (+) True G24609
TU36680 other downstream 91543 373527 ~ 373824 (+) False G24632
TU36683 other downstream 91543 373527 ~ 374082 (+) True G24632
TU36860 other downstream 372108 654092 ~ 665530 (+) True G24771
TU37077 other downstream 1006328 1288312 ~ 1291224 (+) True ndufa5

Expression Profile