RNA id: TU36783


Basic Information

Item Value
RNA id TU36783
length 4733
RNA type TUCP
GC content 0.42
exon number 2
gene id G24708
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 186460 ~ 191242 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aagtggatcaaaacctttcttCAATGTTATCCAAAAACCAAATCTACCTCGTTCTTGTCTTAGGTCGAAATCGATGACCTTTTTTTGACCCACTTCAAAAGCTGACTACTGACGATTAAACGCACAGACTTTGTGAATTTAGCGtcttatgtgtttgtgtgtattttacttGTGGTGGTAAACGTCAGGATCCCGACTCATTCTGTTATTGAAGCCGATGTAGAGGTCGTCCCAGAGCCGGCCGTTCAGAACCACGTGTCTCATCACATTCACTCGGTTCTtgatctgaaacacacacacacgttggatTCGTTCGTTTGCGTTCAACTCCTGCGCGCGTCTCCCCCTGTTCAGTGTGTACCTCCTCGTACGCGTGGTCTCTCTCCGGACGCGCGGCTGGGAAAGAAAGATCCAGAAAGTCCACCAGATAGTCATAACCTCCTTTCAGAGGCTTGAAATCATCATCCGTCTCAATGACCTGAGCGGAAAACAATCCGTGTTATTGCAGCTGTTTATTGCATGAAGCCTCTGAAATTCACCAGCAGTATGTGATTTACCCGAATAACCAGATTATAGTCTTTAAATCCTGCCCAGTTATAATAGCACTGGATCCAGCTTTTGTATTGAAAGATTTCAGCTGAAACAGAAGCATTCAGTTCATCCAAATACAAGTCAAAATCCCAACTGTCCTTATTGATCTTTGTGCCGCTGGGCGGCTCAGTGAAGACATTCCTGTGGTTATGATATTAAAACAAGAGAAGAAAATCATGCTGATGGAAAAATAATTCTTACGTGCAACATGCAAGTGAAGATGCTCATACGAAGTGAAAATGAAACGGATGcatgcttaaataaaaatataaaagagtaaaagcaatttaaaaatggcattcGATATGTTTGTAGATaaacagttaaatataaaacaatttaacaatTGCCTAAAAATTCAGTCTGTTTTACAGGATAACTAACCTATATGgaactatatattaaatgtaaattttatttaaattttggtttaatttttttttaaatatatataaattcagtttggtttactgaaatatttattaaatagagaatattttttattaaatataaatatttgtatatgtgtatatatatatatagtatctttgtaaaatatcattgatgtcatgtaagtgttttttttttttttttttgcatgttgtttgattttcatgcaaatattaatactaaaacaatTAGTTTATGAAAGTACCTGCTGGACGGGTCACTGAGAGCAAGGGCTAAGTCCAGGACAGATCCAGGCACAGGAGTCCAGGTTAGGATGTTTGGACAGCTCTTTCTTATTGATTCATTCAGACCTTCCGCGCTGTTCTTGATGTTCGTCCTCTTTATGTACCTGTTAGTCATGTTGTTCCCGTCACGCATTTCACGCTTTAATGTCGTATACAGCATACGTTCAAAAAATGTGAATGATTTGGATTCTTAACGGGTGTTTGGTTGAATCAAATGGTTAAAACTATACAtgttaaaaagtcatttatgaatttccagcatcagtCTGATTATCatccgtgttttttttttttgtgaaaaccgtaatatatttaatttttggggattctttgatgaatagaaagattGTAAAGATTTGACGCACTACAGACTCGCAGCCGTTGTTTCATGCCGACTCCATCGATTGATTTCTCTACAACGTGTTCCTGGACACCGGAGTTAAACGTTGACTAGCTGGACGGGTTTCTGTGATAAGGGTATCGATGGATGTGTGCTCACCTGTCAGAGGGATGAGCTTCAGTGAAGTATCCTGCAAAAGGGCAGTAGATCTTGGGCTGCAGGGACTTCACCAGCTGCGTCTTATAGTTCGACAGCTTCTTCCTCTCGGCCTTGATGAAATCTGCCTTCCAGCTCTCTGGCGGAGAAAGAGTTTGCATAGGAATGCATTGTTTTCTCGTTGTTGCTGTACCTGTTTAAAGCGGCGTGTGTGCGTGACTCACCGGTGTATTTTCCGCCGTGAAAGGTCATGGGAAAACCGGAGGCACCGCCGGCGAAGTCACTCATCATCAGGTCGACGCCGTGAGGAAGACGGCCGTTGTTTGGTCTGGTGCAGTCCACCGTATTCAGGACCATGTGACCTTCAAAGGTTTCGCTTGAGCTTGAGTTTCGAGTATAAATCGTACgccaaatgcaaatgtaaatgcatgttatagaTATGCAAAAATGCGCGTGCATGCCACGTGATGGGCAGGATTAGTccatttgtgctttttatttggcTTTATATCTATACGCGTTTTTCTTGAGATCAAGCTTTGCGCAGCATCGCACATATTTCTAAAGCCAGTTAATCACGTTATTCCATAATAACCTTAAAACTACGCTACTGCTCAAAACTCGACTTTTTGACGTTCGTAAAATCTCCGGCTTTCAGCAGGCCATCACCCAAACATGCGGTTCCTCCAGCGGCGTGGCACCTTGAGGCTTTAAGGTTTGACTTAGACGGGGAACTTGTCTAGCTTGACCGTGAAGAATTTCTCAGAATTGCTAGAATAACTAGAATTGAATAAGAATTCAAACGAAATGGAAAATCTAAGAAAAGTTCATCATTAATCCTTTTTCACttcttacaaaatatttattatatagttgTAACAAAGCACGTTTTCCTGGATTtttcagcaaataaatgcaaggtTGATGAGCAAAAGAGAAGACCAGCGCAGTAGATATTTAGCTTCTGGTAGGGTTTTCTTGGCTTTGAAACTGTTCAAACCACATTTTCGGCACATACTTTCACACAATTTATTgctctttgttcatgtcaaaTTTAACGACTTAGCATCTTTACACATGTTGTGCAGAAATGCAGCCAAGCCTCTTAGTTTCCCACTGATGTGTTGTACCGATGGGTTCGTGTTAAAGTCACACAACAGTTGCTAAATGTAAATACCTTTATACTCCACGATCAAGCAGGTGTCCATCTCGGGATGAACTCCGTCCATCAGAATCATGAATCGCAGGTGTTCATCCACCTTTCGGAGATCAGCCAGAATTTCAAAAATAACACACgaataaaagtcaaataaacGAGAGGAAAAGCAACACGTACGTTCTGCCACACGCCGAAGGGCACCACGTTGATGTTTGTTAAATTCACTCCGCTTTTCTCCAGATACCTGCAACGAAATGACTCGAGTTTCACAAACGAATTGAATGCAAAATTAGTGAAATAACCTAGTTTTAGATGCGGCTATTTCCTGCCGTTTTATTCGTTGCACCTGTAACTGCCTGATTCTCCTCATTGtggttaatagttaataatctTCTGACTCTGACAGTTACAgatctggtaaaaaaaaactctggagCTCAGCCATCCAATAAAACTTAGACTGCTTTTCTTTATTACAGTGTCTGTACATGTTCCCTATCGAACTGCAACCGTTTTTTTATCAACTGAAGATCATCTTTTCCACTTAGTAACTGAGATATTGTATTTCATCCACTGAAACAACTTCTTTTGCTCTTAGGTTTATcggttgcactttatttgatGTTGTTTCCGTGTTACAGTGCAATTATGAATTTGAGTAGTGAGTAATATTGATTATACTGTAAGGGTGTGTCTTAGGGTTGTTATGTAATTATGCAGAATTATTGTTATTCTAATGTTAAGTGCATTTAACGTGTGTACCAAGAAcacccttaaaataaagtgtttgcaTGATTACACGACATCAGCTCGATTTAATATCTCTATTTCAGTTTCACGTGCATCTTCATGCATTTTAGCGCTGCAGACCCCGCTGGAGACTTCATTCTCACCAAAACACCGGCCGTGAAGTGTCTCCAACGTAAATGGGAATATCCGGACGCTCCTTGGAAAGGCGCTGCAAAGTCGGGTAGCTAACAGAAGAGAAGTGCGTTTAGTAAGAACGGCTTTGTGGAGAGACACAACAGAATCGGACGCAATCGACTCTGACCTCAGGTGATCTGAATGCATGTGGCTGATGTAAACCAGATCGGCTCTGATGAGTCTGTCCATGGCGTCGGACGGAGGCTCGTGGAGGAGCCACCAGCCTCTCGCGAACGCGGGGCCCGTGAGCCACGGGTCGAACATCATCCGCTTGTCCCCCGCTTTCAGCTCCATGCACGCGTGCGTGATGTACGTCAGCTGAAACGCAGAGGGTCGTTGGACGGGCGTCACTCTCCAAGTAACGTCTTTAATGCAAGCTACACTTTAAACAGGCCGTTTGTTTTATAACAGGTGAATCAAACGATACGAGGCACGGCATTCGCATGGGCGTGGATGTTTAAAGAGAAATTTGGAGCGGTCAACAACGGTGTGCATCGCTTCAGGGTTTTATTTACATCCGAGACGCGATGAGATGTGTGCTCCGTTTTTGTGCATGCTTGCATTAAAATGAGTCAAATTAAGACTAATGTTAACACGCTTGAGCAGAAGCCTAACTTGTGTTCTGGTTATTGCTGTGCGGCGAGATGTAATTGAGATGTGGTGGAATGCAGGGCGGGTCGCTGTCACAGACCGTCATCTCTCCGTCGAGCAGCTCTTGTGTTTCTCTGGGCTCTGAGGTCCAGGGGTCTGGAGGATTCAGCTCCAGCAGCTCTAAACCACCATCAGCGTCCGACAGCACTGTCTCTGCACGCACAAACACCACACGCAGTTCATTCATAGCATTTCCGGATCGGCCGCgattaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36788 lncRNA upstream 154 191396 ~ 194159 (-) True G24713
TU36787 lncRNA upstream 14651 205893 ~ 208820 (-) True G24712
TU36801 lncRNA upstream 21363 212605 ~ 213099 (-) False G24724
TU36802 lncRNA upstream 21363 212605 ~ 213149 (-) False G24724
TU36803 lncRNA upstream 21363 212605 ~ 213246 (-) True G24724
XM_043236794.1 mRNA downstream 2030 177273 ~ 184430 (-) True ccdc107
XM_043236159.1 mRNA downstream 15126 136003 ~ 171334 (-) True kcnc2
XM_043236160.1 mRNA downstream 15126 138800 ~ 171334 (-) False kcnc2
XM_043236161.1 mRNA downstream 15126 141594 ~ 171334 (-) False kcnc2
XM_043237975.1 mRNA downstream 99850 75381 ~ 86610 (-) True cpsf6
XM_043237773.1 mRNA upstream 8569 199811 ~ 205364 (-) False krr1
XM_043237772.1 mRNA upstream 8569 199811 ~ 205364 (-) True krr1
XM_043237830.1 mRNA upstream 58899 250141 ~ 252421 (-) True phlda1
XM_043236959.1 mRNA upstream 62024 253266 ~ 267765 (-) True nap1l1
XM_043236958.1 mRNA upstream 62024 253266 ~ 267764 (-) False nap1l1
TU36763 other downstream 112974 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 152544 28072 ~ 33916 (-) False LOC122343420
TU36754 other downstream 175359 10833 ~ 11101 (-) True G24689
TU36940 other upstream 717704 908946 ~ 933108 (-) False pik3cg
TU37001 other upstream 877918 1069160 ~ 1070096 (-) True G24875
XR_006250650.1 other upstream 1418118 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other upstream 1418118 1609360 ~ 1618298 (-) False zgc:113263
TU37319 other upstream 1462349 1653591 ~ 1654807 (-) False ccdc167

Expression Profile