RNA id: XM_043236906.1


Basic Information

Item Value
RNA id XM_043236906.1
length 4684
RNA type mRNA
GC content 0.47
exon number 15
gene id slco1c1
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 406642 ~ 496868 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCTGTGCCAAGACAGACGCGAGACATTTGACCTAATTCGTCTCTTGCTTACAAATTATGGATATGCATTGCGCACTAGACATGGCATGGTTTAAAATGGGTCTGGCGGTGCGCAAAGCTGCGCGCGTTTGCGTTAGAAGAGGAGAAAGCCAACATCTGCTCGTTAAAAGGGTGCATGCATAAAtgccgaggaactgcattggAGAAACGTCACCCAAAGAAAACGAGATCTTCTTGTGGAAAATGGACCCGCCGAATAAGGAGAGGAGGTCACCGGAGAACGGCCCCGGCTCGGCTCGGCCCTGTTGCTCAAGCCTCAAGATGTTCCTCGTGGCCTTGTCCTTTGCCTACTTCGCCAAGGCATTATCCGGGAGCTATATGAAAAGCACAATAACTCAGCTGGAAAGACGCTTCGACATCCCCAGTTACTTAATAGGTGTCATTGACGGCAGCTTTGAAATAGGTAACTTGCTAGTGATCGCCTTCGTGAGTTACTTTGGTGCCAAACTTCACCGCCCGAAGATCATCGCCGTCGGCTGCCTGTTGATGTCGCTTGGGACTTTTCTAATTGCCTTGCCGCATTTTATAATCGGACGCTACAAGTTTGAGACATCGATTCGATCGTCGGTGAACTCGAGCAGTAACCTCTCTCCGTGTCCAGTGAGTTCTGGCGTTTCGGCCACAGTTCCCAGCAGCACCGCCGGACCGAGCTCAGGCTGCGAACACGAGTCCAGGTTGTCCATGTGGATCTACGTTTTCCTAGGGAATATCTTGCGGGGAATCGGCGAGACCCCGGTGCAGCCTCTGGGAATCTCGTACATCGACGATCACGCTCTGGAGGAGAACGCCGCCTTCTACATCGGATGCGTCCAGACGATATCAGTCATCGGCCCGGTGTTTGGCTACCTGCTGGGGTCCGTCTGTGCCAAGATATACGTGGACATTGGATTTGTCAACATGGAGAGCATTAGCATCACCCCGGGAGATGCGCGCTGGGTAGGCGCCTGGTGGCTGGGATACCTTATTGCAGGACTCATCACCCTGCTCTCGGCGGTGCCGTTTTGGTTCTTGCCCAAGTCTTTGCCCCTGCCAGAGAGACGGCTTGCCAAGTATTCTCCGGAGCGGACCAGCTTCATCAAAGACTCGCCACTGCTGGAGCACAAGTACCAGGCAGACGAGCCAGCCAACTTCGTAGAGATGGCCAAAGACTTTTTGCCAACGCTGAGATCTCTTTTGGGGAACCCAGTCTACTTCTTGTATCTCTGCGTCACCATCATCCAGTTCAACTCCTTGATCGGTATGGTGACGTACAAGCCAAAATACATCGAGCAACATTACGGACAGTCAGCGTCCAAAGCCAACTTCTTAATGGGAGTGATCAACATCCCAGCCGTAGCCTTGGGAATGTTCTCAGGGGGTGTGATCATGAAGAAGTTCAAGCTGAGCATCATGGGAGCAGCCAAGTTTGCACTGGGAACGTCTCTCCTGGGCTACTTCCTGTCGCTTTTCTTCTTCGCCATGGGATGCGAGAATGCCAGCGTGGCCGGCATCACCAGGTCTTACAATGGGACGGAAAGCCTGTACAAAGAGGACAAATATCTCTTAGCGTCCTGCAACACGCACTGCGACTGCCCCAGAACAAACTGGGACCCTGTGTGCGGTGAGAACGGCCTCACCTACGTCTCGCCCTGCCTGGCTGGATGCCGGACGTCCCACGGCTCGGGAATGGACACGgtgttcGAGCAGTGCAGTTGTGTAGCGGCCGGGAATCACACGGCCAGTGCGGGTCAATGCAACAACAGAGACAGCTGCCATCGGGTCTTCCCCTACTTCCTGGCTCTGTCTGTCATCACTTCCTTTATCATCTCTCTGGGCGGAACGCCGGGATACATGCTGCTCATCAGATGCATCAGGCCTCAGCTGAAGTCTTTAGCTCTGGGTTTTCACACACTGACGACGCGCACTCTAGCTGGAATTCCAGCTCCCATATACTTCGGAGCCATCATAGACACCACCTGTCTGAAATGGGGTCACAAGAAATGCGGTGGAAGAGGAGCCTGTCGAATCTACAACACTACTGCCTACAGGATAGCATATCTGGGCCTGACGCTGGGCTTACGGACCGCGTCCTTCTTCCTGTGCTTTCTGGGTCTGGTGGTGTTACGGCCGCACGTTCGGCGGCAAGAGCGCAGCACGCTGGCAAACGGAGGCTCGGGGGCCGCGGCCGGCGAGCTGCAGGCCCTCAGGAAAGAAGAGAACAACAGCTGTAACTCGGACCAGTGCCTGCGGAGCGCAGATTACGACCCGGAGCGGGAGACGCGTCTGTGACGGCCCGCTCCGTCAGACTCGTGTAAATGATGTGACATAAGTTGTTTTTGATATAGTAGATTTATTTCTTGAATGTACATGAtgttttgggtaaaaaaaaaaagaagaagaatgtcTTACAAACTACCTAACTCGTTCGGATTTAACGTAAAGATGCTTTTAGAAGCGTCAGACACCCGGCTAGAGGTAATTCAGCATCTTTCATTTAAGCCATCGTCGTGCACGGGCCCTATGAGGATAACTAACACCTTGAGGGTCCGTCGTATCTCTCTCTTCTGCCATACACACAGATAGATGCCTGAAACAGTTGACCACGACACTGTGTGCTTAATATAGGCAGGCCTACAGGTTGACAAAGTTGTCGGATATATCTCCAGTCGCGTCCCATTTGTGTCGTCACGAAGGAAACGAAACGCTCACCGTCGTGCTTTTCAGTGTCGGCGGTTCCTACCGTTTAAGAGAACCGCGCGAGGAACGGGCCGGAGCGCCGCGGGTATGTAAGTAATCATCTCCATGATCGATGTTGTGCAATGTCACCgtgagaaatgtgtgtgtgtgtgtgtcgtcacGTGTGAACGGGTGCATTCCTGtgccaaaaaaactaaactaaacaaaaaaaaagacacaaggAGTGCAAGAAGAAGGTCAGAGTCAACGTGGTCTATTCTCAGGTCGTTTAATCAATTGTTCCTCAAATTTGcaaataattattcttttatatactTGTATAAATGGTTGTCTGGTTTCAGCTGGCGAACACGTTCCTTTGTCCTTCGTTTCAGGGCAACCGAGCGAAAGGGTTTTTATTTGTGACTTGTAAAGCAAATAAAACGAGTGGCATTTATTACTTGCTTTTACGTTAGGCACGTACAGAATTTTAtttgctgatgtttttttttttttttgtatcaaagtgatgtgtaaaaaaaaaaaaaaaaaaatgcattcatgtgaaATATTAGATACgttcttcttttaaaaataaaatgaatgatttgcTACATTTCGAGGAAGAGCCACAATCGGTAGCGTTTCCGCTTTAATCGTGAAAATGGCATATACAATCACAGCGGGATGTAAACAAGGCACTTATACAGGTGATTTCGGCACCCGTCCCAAGAACACAGGGTTCATAAAAGAGCATATTCCACCACATATGACGGGAAGATCACAATGCAGGCATAAACAAGCCCCTTAGAAGTAATTACACACCATTTTCCATCTTTAGGGAATCAGACGACCATACAAGCTTGCATAGCAAAGACAACTAAGAACATTTTCGTGTTTTCCCTCTCGATTTTCCTGAGGGAGAGGAAGCCTCGTGCGTCACAAACGCGTGCGCTGACAGCATGACTTTCAGCACCCACACAGTGGGTGACGGCTCATTCTTGGTAAacgaaaactaaaaaaaatgacaatctCATTACAGAAATCTGATTTAGCCGTGTTTTTTCTCCTCTTACAGCGCAGGGTAATTGTCAGGCTTTTAATCTTGGCGTAAGCCTAAACGGTTTTCATTGTAAAACTTGGACTAGAATAGGCAAACAATGACACAGGATAGCCAGCCCTCATCTAATAACAAAGTGAATCTCACCGAAACACGTCCAGGTCAGATTTAACCCTGCAATCAAATAGAACCCAAAACGCTAACTGTATTTGGCAAAGGAAAACGAATAATTATCTTCAGCGTGATGCGTCGTTCGCTAATGCATTTATGCTTTGGATATTCTAGAAAAACTTGTGCAATATTAATTGGAGCGTTAATTTCAATGCTGTCAAACATATTCTGATGTTAGAAGAgagataaaacactgaaaatacaaattttaattttcactttttttttcctcatttctgCAATGGACTATTTGGACAACTGcaagtatttataaaaatcagaatcttgtatgtgtatatatatatttatttatttttattttttttaatttttttctttcatggcAGAAATGAGCTGCATAATAGAAATGTCTTAATTATCGTACTGAATTTTTAATACATCCATTTACTTTACAAAATGGGCTGAAGTGTGGCCTGGACCTGTTTCGTAAGATTGAACGATGTTAAGCATGAACAGCACAAAACCATCTACCTCAAATGGACTCAAAATTAAGAAAGCCTGCTTAGTTTGGCGTTTCCTTTGTTTAACAACTAACAGCATTTGAACTCAGGTGTAATGGACCTACCTCTCCAGACTCAAACAGACACGCTAACCGCTCACTAACAGACTGTTTGCTCGGCCCGGAAATAAATGCTCTCATTGTGATGTGTTTACTTCTTAcctgttgtttgtgtgtatacGGTTTTATTCTTCTTAATTAAAGTTGATCAACTGAC

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36792 lncRNA downstream 182052 279998 ~ 281987 (-) False osbpl8
TU36803 lncRNA downstream 250793 212605 ~ 213246 (-) True G24724
TU36802 lncRNA downstream 250890 212605 ~ 213149 (-) False G24724
TU36801 lncRNA downstream 250940 212605 ~ 213099 (-) False G24724
TU36787 lncRNA downstream 255219 205893 ~ 208820 (-) True G24712
TU36884 lncRNA upstream 112226 604883 ~ 605114 (-) True G24792
TU36887 lncRNA upstream 119734 612391 ~ 612843 (-) True G24795
TU36888 lncRNA upstream 120470 613127 ~ 613653 (-) True G24796
TU36891 lncRNA upstream 127520 620177 ~ 620588 (-) True G24799
TU36894 lncRNA upstream 130672 623329 ~ 624257 (-) True G24802
XM_043236900.1 mRNA downstream 14977 383479 ~ 449062 (-) True cog5
XM_043236901.1 mRNA downstream 14977 383614 ~ 449062 (-) False cog5
XM_043236904.1 mRNA downstream 80713 371870 ~ 383326 (-) False e2f7
XM_043236903.1 mRNA downstream 80713 371870 ~ 383326 (-) True e2f7
XM_043236782.1 mRNA downstream 94616 360167 ~ 369423 (-) True csrp2
XM_043236980.1 mRNA upstream 7947 500604 ~ 580345 (-) False pde3a
XM_043236978.1 mRNA upstream 7947 500604 ~ 580345 (-) True pde3a
XM_043236979.1 mRNA upstream 7947 500604 ~ 580344 (-) False pde3a
XM_043237585.1 mRNA upstream 136408 629065 ~ 640725 (-) True aebp2
XM_043236478.1 mRNA upstream 150791 643448 ~ 774558 (-) True plekha5
TU36783 other downstream 272797 186460 ~ 191242 (-) True G24708
TU36763 other downstream 390553 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 430123 28072 ~ 33916 (-) False LOC122343420
TU36754 other downstream 452938 10833 ~ 11101 (-) True G24689
TU36940 other upstream 416289 908946 ~ 933108 (-) False pik3cg
TU37001 other upstream 576503 1069160 ~ 1070096 (-) True G24875
XR_006250650.1 other upstream 1116703 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other upstream 1116703 1609360 ~ 1618298 (-) False zgc:113263
TU37319 other upstream 1160934 1653591 ~ 1654807 (-) False ccdc167

Expression Profile