RNA id: TU36856


Basic Information

Item Value
RNA id TU36856
length 2012
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G24768
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 649509 ~ 651593 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacgcacacaaaaaaaccaTCACATTCCATTAAACGTATTTGGGAAGCATCAGACAGCATAAACGGCATCCTTACTGTTCTGGGATCAGGTTTCTTGCTCTTCCTCAAGGTAACATAAGACGCAATGGTGGAGGATTCGGGCATGGGTGATTTAGTCCTGGGACTGACCACTCCGACGGGGTAAACTACACCTGATCGAGAGAGGAACACTTTGGTGATGCCGGCCTGCTCCTTCTCTGCCATCTGCTCAGATTTGTCTTCGCCGTTGCTTTCGTCGACCTCGGCTACGGTGGTGAGCTCCGGCTCGCTCTTATACAGTCTGTAATCCGGCCCCTGAGAGCAGAGATTTCACCTGTTTACACACCATTTACAGCCATTCTTTCTGCCGCCACCGGAAGGCTATGATCACggattacatattaaaatgggAATAAAGAACAAACTAAGCCTGGCGAAGGATGAGCTACAAACCTACGCAGTGCTGCTGATCTACTGAACGTCTTGCAGGAAGTGCTCGAGGACGAGCGTTTGATAAAAACCAAAAGCAAAAAGCACTTGAAATGCAAACCAACCCAAATGGCttttttgatgaacatgaaTATTCTGCCCAAAACGAAAACGGTGAACTACGTCTTCATTACAGAGGAAAAAAGTTGCACCAGACAAGTTTGTAGTGATATGAGGATGAGAAAATAATGACACAGATGGCTTTTTTAAGGTTAAGTATTCATTCAAAGCTGGTATGTGAAGAGTAGGTGACTGATGTAATACAGGCACCTGATATATgcaatttaatattcaaatgagctaaataaaatagaaataatattcatacatttcatttagGAATGTTTAATGGTTGCTCTTATTGgtgttgttattaatatactttatttattagtaatgaCACTGAATAATCTTCAATATAGgtagtggttttatttttgcatgcatttatttatgtgacgAGCTAAATAACGTCcgtataaatgcataaaaatgtacatgtggtcagtcacaaaaaaattgttaaattctGTATAGGTGGTCAgcaaaaatttacaaaaatgggAAAGAAATCAGGTTAAAATAATTTGAGATGTTACATAATCTATGGGTTGtcagtaaaaacaaattaaaaactaaatatgtctGAAATTGTTTACACTGCTAATGTAAAGGTGGTCAGTATTAActtattacataataattagGGAAATAAATCTGTCTGAAATTGTTTATAAcattaaatgatgtttatgaACAAAAATTGGGAAAAAATCAGGCTGCAATTGTTACATAATACATGGGAGGtcagtaaaaatgaatacaaataaactGTGTTAATGTAAAGGtggttaatataaatgtatcgCATAATAATTGGGAAAACAATGTGGtcagtaaaaatgaatacaggtttttttttttctttgaatgatGTATAAGTGgtcagtaaaaatgtaataaaaaaaatcaggtagAAATAACTGAATATCCATTGATGAAAGGGAATGATTTTTTTGATCTCAGAATAGCAGCTATCTGTTGCTAACAAAGCCCGATCTGGACTGGGTTTCTGAGGATGGGTTAATGAAGATGGGGTGGGATGGGCGAGGGGTCACAGCTCTGTCTTACGCTGTGGGCACCGTTGCGCTGGGCAGCCTTGCGGTCCTCGGGCCGGTGAGGGGTGGTGCGGGGCGCGTGAGGAGGACGCTCTCCCCCCTCGTACGAGTACGGGAGCGGAGGACGAGGAGGCACCGAGTCTGACTCCTACACACAACCGACAGTCACCGCAAACCACAGCagcacagagtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtacaCGCTCATCTGGACAGTCACCGTCAACAACAACCAACCACAGCAGCACagtgaatgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcatctGGACAGTTACACAAACATCATGATGTCTGGAACAATCACTTACTTCACTCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36846 lncRNA upstream 24284 623251 ~ 625225 (+) True G24758
TU36839 lncRNA upstream 29813 619477 ~ 619696 (+) True G24754
TU36836 lncRNA upstream 33653 615600 ~ 615856 (+) True G24751
TU36831 lncRNA upstream 41995 607287 ~ 607514 (+) True G24746
TU36752 lncRNA upstream 69159 580109 ~ 580350 (+) True G24687
TU36909 lncRNA downstream 213247 864840 ~ 933111 (+) True G24811
XR_006250559.1 lncRNA downstream 461302 1112895 ~ 1127380 (+) True LOC122342413
TU37037 lncRNA downstream 595787 1247380 ~ 1249169 (+) False LOC122342481
TU37074 lncRNA downstream 635019 1286612 ~ 1287073 (+) True G24925
TU37102 lncRNA downstream 677872 1329465 ~ 1331843 (+) True LOC122342419
XM_043236911.1 mRNA upstream 210157 434343 ~ 439352 (+) True gpr22a
XM_043236912.1 mRNA upstream 210157 434343 ~ 439352 (+) False gpr22a
XM_043236913.1 mRNA upstream 210157 437183 ~ 439352 (+) False gpr22a
XM_043236781.1 mRNA upstream 288587 343592 ~ 360922 (+) True zdhhc17
XM_043237775.1 mRNA upstream 436350 205505 ~ 213159 (+) True LOC122343357
XM_043236972.1 mRNA downstream 209003 860596 ~ 863551 (+) True LOC122342832
XM_043236966.1 mRNA downstream 215603 867196 ~ 888759 (+) False LOC122342829
XM_043236967.1 mRNA downstream 215603 867196 ~ 888759 (+) False LOC122342829
XM_043236968.1 mRNA downstream 215603 867196 ~ 888759 (+) False LOC122342829
XM_043236963.1 mRNA downstream 215603 867196 ~ 888759 (+) False LOC122342829
TU36683 other upstream 275427 373527 ~ 374082 (+) True G24632
TU36680 other upstream 275685 373527 ~ 373824 (+) False G24632
TU36656 other upstream 354440 293235 ~ 295069 (+) True G24609
TU36577 other upstream 564547 83688 ~ 84962 (+) True G24555
TU36860 other downstream 2499 654092 ~ 665530 (+) True G24771
TU37077 other downstream 636719 1288312 ~ 1291224 (+) True ndufa5
TU37269 other downstream 1018919 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 1132699 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 2463915 3115508 ~ 3117988 (+) True ninj2

Expression Profile