RNA id: TU36882


Basic Information

Item Value
RNA id TU36882
length 358
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G24790
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 626576 ~ 626933 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGTGTTTCTCGCGGCTGACGAGCTTGGGAGggatggaaaaaagaaatatcatATCTGATAACTAATGGAGACAAGAGTGCACTTTTCTTGTAGTAACGGCCTCTCTTCTCTCCGATTGCGGCTCGGTTTCAAAACTTAGTGAAGTTAGTTTATGTCCTACATCGGTGCTACCTTTAAGGCAACgtccaaaatgaaataaacctaAGGAGGGACTGATTTGAAACAGCAGCATCCGCTTGTGCCATAGATATAGTgctctttatttaaatctttattataaCCAAAAAATAATACCGATAtcttattatttgtatattagttttattgtagcttaattttttttttaatactataaa

Function

GO: NA

KEGG:

id description
ko04711 Circadian rhythm - fly

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36894 lncRNA downstream 2319 623329 ~ 624257 (-) True G24802
TU36891 lncRNA downstream 5988 620177 ~ 620588 (-) True G24799
TU36888 lncRNA downstream 12923 613127 ~ 613653 (-) True G24796
TU36887 lncRNA downstream 13733 612391 ~ 612843 (-) True G24795
TU36884 lncRNA downstream 21462 604883 ~ 605114 (-) True G24792
TU36938 lncRNA upstream 237751 864684 ~ 933108 (-) False pik3cg
TU36944 lncRNA upstream 296706 923639 ~ 926377 (-) True G24830
TU36989 lncRNA upstream 326532 953465 ~ 957349 (-) True G24863
TU36996 lncRNA upstream 341541 968474 ~ 969351 (-) True G24870
TU37000 lncRNA upstream 441407 1068340 ~ 1068899 (-) True G24874
XM_043236980.1 mRNA downstream 46231 500604 ~ 580345 (-) False pde3a
XM_043236978.1 mRNA downstream 46231 500604 ~ 580345 (-) True pde3a
XM_043236979.1 mRNA downstream 46232 500604 ~ 580344 (-) False pde3a
XM_043236910.1 mRNA downstream 133335 464039 ~ 493241 (-) False slco1c1
XM_043237585.1 mRNA upstream 2132 629065 ~ 640725 (-) True aebp2
XM_043236478.1 mRNA upstream 16515 643448 ~ 774558 (-) True plekha5
XM_043236479.1 mRNA upstream 16515 643448 ~ 774557 (-) False plekha5
XM_043236462.1 mRNA upstream 16515 643448 ~ 774557 (-) False plekha5
XM_043236461.1 mRNA upstream 16515 643448 ~ 774557 (-) False plekha5
TU36783 other downstream 435334 186460 ~ 191242 (-) True G24708
TU36763 other downstream 553090 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 592660 28072 ~ 33916 (-) False LOC122343420
TU36754 other downstream 615475 10833 ~ 11101 (-) True G24689
TU36940 other upstream 282013 908946 ~ 933108 (-) False pik3cg
TU37001 other upstream 442227 1069160 ~ 1070096 (-) True G24875
XR_006250650.1 other upstream 982427 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other upstream 982427 1609360 ~ 1618298 (-) False zgc:113263
TU37319 other upstream 1026658 1653591 ~ 1654807 (-) False ccdc167

Expression Profile