RNA id: TU36989


Basic Information

Item Value
RNA id TU36989
length 3855
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G24863
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 953465 ~ 957349 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAggtaagaaaaatgtatttctgtaacAGCTGAAATGCAAAATATCATCAAACCTGAAAATACACATCTATATCGAGAACACATGGGCCAACAGGACACAAACTGTATAAAGAACACAGGAGCTCGTCTTAGGAATGAGAGAAATGCctattaacactttttttttttttttaaacagattctGTACGAAGAGTCCAGGTATAAAAATAAGGCCTTCGAAATCTTTACAATTGTTATGGCTGGGTCACGTCGAAGCACTGAAGGTGTAGCTATAACACATCTACAACATGACAGAAGTGGACAGGCGGTGTGGCCGGGAACAGGGCTGCTTGTGCAGTGTCAGGACAAACCATCTAGATAGCAGTGACATTCACTAATAATGGCAAAGTAGTAGTATGCACACATGCAACATTACATATATCAGTAGACCAACTGAACAGAACGGAGAACATTGCAGAATTAATTCATATTGCTTCAggcattttttgttgttgttgttgttgttgttgacgtGGAAGCAAGCTGGGTGTCTTTCGTAGGAAACTCTGCGTGTGATTTTGTGTAACCGAACATGTTCACAAATATTCAAAGTAAACCAATGAGGATTGGAGTCTCACGCCGTTCTTCGTGAAATCAGCCATTAAGCTGCTGAAAAGAgttataataatagaaataagaaGTGAAcgcagaaataaaatgcaatccCCCCCCGAAAAAGCATgttaaactacaaaaataaaaactaaattaaactataaaacaaaataaaaaaaaaagtgaataaatattatatttatataaagtatgGAAACCCATAACACTCCCCAGCAAACGTCATTTTTTAAGATACAAACTCACAAATCGCATTAAAAAGTTAGAGCTgtggaaaaagacaaaagtcAGAATTCGACTTTTATTCTCTGAATTGCAAAACCTAAATCCGAATTGTGAGATTACTCTGAATTACGATGAAAAgtcataattgcaaaaaaataaaaaaataataataataattttattttctaattccGTGAAGGAGATGGGCTTCCATAAtgataacaaaaacaatcattaaaagcaaaaccttaaaataaaacgcataaataaaaaattgcactgCTATGCCATGgtgacattcattcatttctacaAGAGGGATGTGTTTACAAGGACCTACTGTATAATAACACTTCATAGCTTAGTAACAGTTCAACATTTCCCGTCGATGAACTGTAGATCACAGAGATTTGTGGCACTGTTGGACCAAAAGAAAGAGCCATAAGGTCAAAAGGGGGATCAGATCTCGACCGCGTTGCAATATCATTTGTTTTGCTTAAGCGGTCCTTCGCGCTATTCTGAAAAAATATAGATAGAATAATCTCCGATGATTGACGTGCAACGGGAAAAGGCAAAACAAGTAGCCGATCATCCTCGTCTTCTTCGGGATGACCTTGAACGGGCGCCGAATCTTTATGGAAGCGCTTCACGCATAAAAGATGGTGCGGAGGGGGGGGGTCCGGGCTTGGGTTCTAGCTCTGGTAGCTGACCTATGGACAGTTTCACATTGGCAGCAAGGCAACAAGGTAATAATCTGGGGGATGAAGAGCCGTCACAGCAAACACAAGCTGGGTTCACAGAGAGTACTGTCTTTGCACAACTATACATGATTATTTCTCcttgctttttatataaataaaatggtacTCAAATTCAACAAACAACCAGAAAGAGAAAACGAAAGAGTGCAAAGAGGGGTCTTTAAAGGAGTTGTGGCTCCTTAGAGGAATAGTTTAAATAactctgattaaaaataaagcctCGGGAGAGCATTATATCGCTtgtgcggtgaatgggtgccgtcgaatGAGAGTGACgtcgcaataatccacaccgcTGGAGCACATCGATTCTAATCTAGTGAAGACTGGtgcttttttataaacaaatccatcgttAAGACATTGTTAACTTAAAACCATTGCTTCAACTAAGCCATTatggatgtttggggtttttttacaagctgtttagactctcatactgacggcacccattcactactgACGAGCAAGTGATATAACGTTCAagttgatgaagaaacaaactcgttGACGTTTTGGATGACCCGAGGGCGAgtgcattttcagaaaatgctcatttttgggcgaactgttcctttaagtattAAGATTCTGACGAAGAGCTTCTCAGAGATTAAACGAGAGAAAATGTCTCAATGCGAAAGCGCATTGATCTGTAAACCTGTTTGGAAATCAGCATTATTTTGCAATTCTTCGCTCTTCCCCCTCGATGTCAACATTTACAATCCATATACTGTCGCGATTTCAGTGTAAAACCGAATATTCAGTGGGAAGTTAATCACATTATTACCgtataatctatatataatgCTTTAGATTTATTCAAAACTAGGCTAGAGACACTgccattcacatttttattttaaatgtacgaTTTTTAAGTTGTTGATTtccaccaaggctgtatttatttgataaaaaacactgtaaaattgtgaaatattattacaatttaaaataactgttttctattagaatattgtttaatatctattttattCTTGCGATGCAACGCTTCattttcagcgtcattactCCGCTCTTCAtcgtcacgtgatccttcagaaacgaTTCTATTATGCTTGAAATTATTAATGCGTGATCAATGGATAAAAACAACAGTGTAATAAAAAGCAGACATTCCTCCGTTAACTCTTTGAGAAGGTCTTCATATCTGATGGTCAAACACTAAAAAGGTGCGCTTATGACCTGAcaacacgtaaaaaaaaaaaaaaattggcaacaGACCTCGGCCGAATGCCAATACTGGCTCACAGCAATGTACCTTTCCTCTAGAACAGTCTTGAAAGACTGGGATCCTGCGGTACGtaattatttcagttagtatTCCTTAAAAACACAATCGGAGAGCATAAATGGAAAACGCAAAGGCCCTTTCATAACCAATGAAGATACATACGACCGAGGAAGATAGAAACCACTAAATCCTTGAACCTCTGAGAGAAAactaacaataaatacaaaacaaaacaattataataaaagataTGTACACACATTTCCAACAATAGGGTCTCTAGAATACTTTCAACCTTTAAAATGGCATACAAATATACTTCTGCTCATCGTGTGAAGCGCTAATCAGGTCAgttagaaaattaataaaaggataaattattatacaaaattcATCACCGGTTGAAGTTTACCACGGGGGCgcgtgtctttttttttttttttttttttttttttttttttaaatcgacaAACACTTGTGTGTCAAAAACAAATACTCAAAAACCTGAATTCATCcaattttagaaaaatacaacTTGCCGAAAAAGCGTCTGTAAAATATTCCCTTGTTTGAAACGTTTCTtcccctcctttttttttttttacgtagtTCAGACTTGAAATTAAGTGCACTTTAGATCGACACGGTTGAGTCCGAAGGGCTTTCCTTCACGCTGTCCGCCTCTAcgacaaaaactaaaataaaactccatgTCGCTGAATGTCTGAAACGCGTTGTGTACTGGTTTAAATCAAAATCCGGATCTGCACGAGGCTGAAGGAGAAGTGAGGAATCATTCTCTGATGAACTGGCAGATGAAGCGTCTATTCCTGATGGGAACGGATGGGAAGGAGCCCTgtaggagaggagaggaggcgAAGGACGCGACTCAACCGTAGCGGCGTGTAAGAGGCAGCGGTGGGATCAAGGCAGGACAGACACAGTGCTGGCGTCCCGCGGCAAACTCTTCTCAGACTCACACTGCATCAGTGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36938 lncRNA downstream 20357 864684 ~ 933108 (-) False pik3cg
TU36944 lncRNA downstream 27088 923639 ~ 926377 (-) True G24830
TU36882 lncRNA downstream 326532 626576 ~ 626933 (-) True G24790
TU36894 lncRNA downstream 329208 623329 ~ 624257 (-) True G24802
TU36891 lncRNA downstream 332877 620177 ~ 620588 (-) True G24799
TU36996 lncRNA upstream 11125 968474 ~ 969351 (-) True G24870
TU37000 lncRNA upstream 110991 1068340 ~ 1068899 (-) True G24874
TU37028 lncRNA upstream 172997 1130346 ~ 1131512 (-) False LOC122343365
XR_006250762.1 lncRNA upstream 173185 1130534 ~ 1132035 (-) True LOC122343365
TU37063 lncRNA upstream 293583 1250932 ~ 1252579 (-) True G24917
XM_043236943.1 mRNA downstream 38366 908934 ~ 915099 (-) True pik3cg
XM_043236474.1 mRNA downstream 178904 727438 ~ 774561 (-) False plekha5
XM_043236477.1 mRNA downstream 178905 767718 ~ 774560 (-) False plekha5
XM_043236476.1 mRNA downstream 178905 767718 ~ 774560 (-) False plekha5
XM_043236473.1 mRNA downstream 280223 643448 ~ 673242 (-) False plekha5
XM_043236181.1 mRNA upstream 158042 1115391 ~ 1120658 (-) True LOC122342410
XM_043236180.1 mRNA upstream 161344 1118693 ~ 1120656 (-) False LOC122342410
XM_043236182.1 mRNA upstream 165318 1122667 ~ 1125124 (-) False LOC122342412
XM_043236184.1 mRNA upstream 165318 1122667 ~ 1125100 (-) False LOC122342412
XM_043236183.1 mRNA upstream 165318 1122667 ~ 1125062 (-) True LOC122342412
TU36940 other downstream 20357 908946 ~ 933108 (-) False pik3cg
TU36783 other downstream 762223 186460 ~ 191242 (-) True G24708
TU36763 other downstream 879979 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 919549 28072 ~ 33916 (-) False LOC122343420
TU36754 other downstream 942364 10833 ~ 11101 (-) True G24689
TU37001 other upstream 111811 1069160 ~ 1070096 (-) True G24875
XR_006250650.1 other upstream 652011 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other upstream 652011 1609360 ~ 1618298 (-) False zgc:113263
TU37319 other upstream 696242 1653591 ~ 1654807 (-) False ccdc167
TU37444 other upstream 944494 1901843 ~ 1902567 (-) False rsph9

Expression Profile