RNA id: XM_043236306.1


Basic Information

Item Value
RNA id XM_043236306.1
length 2713
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC122342481
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1245578 ~ 1249169 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTATGATGAGTTCGGATGAATAGTGCAGCGCCGCCTGGTGGTGGGTTTAATATGACTCGTCCTTTCTTCCCTGCGCGTCTCGTTCCTTCCAATGACCGTGCAAGAAGAAATGCGGCTAGTGAGGTTTCGGGCTTCGCGGGGGCGCAGCGTGTCACCGGCGAGCCGCGGCGTAAAATGACCGTCAGACAAAGACGCGGCGACATCTGAGCGCGTTCGAGGACAGACGCGGCGACGATGAAGACGACGAGGCGAGCGCAGCCCGCTTTACCGCAGTGGATGCGCATGTATTTCTACGGGATGCACGGAGTCACGCTGGACGTCCTGCAGTCCTCCGCGCGCCGGTTCCTGGGTGACCGCGACTTCAGACTGCTGGGCTTCTCCTCTCCGTATCTGTGCGTCGTGCACTCCATTGCGCATCTGGTTCTGGAGAAGATCTACCTGCAAAAAAGATGCTTCCGAGAGCGACCCGTCGTCTTTCACCTCGTTTTCTACCCTTCCTTGTACATCTGCCTGCAGATCTTAATAGAGAGCGTGGTGACCTGCACCGAGAACATCAGAGCGGTTTCCGTCACGCAGCTCCTTGTGCATTACATCCTGGCTTTGTACTTCACGAATGTCTTTCATAAGGGCTTCCTGAGTCTGCAGTACCAGGAAAAGCGGGTGTTATTGAGGTCGTCCCGCCCGAACGGGTTACCCGGCGTCCTGCGCTTCGCGTTCTTTGGGATGCACGGCTTTCTGGACGAGGTGCTCTTCACTTCTGTGTTTAACTTGTTCGAGAAAGCGGACGGGTTCTTGAGGGGCCACACGTCCCTGTGGTCCTTCCTCATGTATGGGAGCTGCAGCTTCGTGGTGGAGAAGCTCTACCTCCACCTGCACTTCAGGAGAGGATGGGGAACCTTGCAGCGGCTCCCCATCTACATCTGCTTCATCTACACGTGGGAGTTCAGCTGGGGCTTCGCTCTGAGGCGGTATGACGCCTGTTCCTGGGACTATTCCCACTATCCTCTCAATTTTATGGGGCTGGTGACGTTGCTGTATCTTCCAGGATGGGTCTGCCTGAGTCTGTATCAAGACGTCTTGTCGAATGTTCTTCTGAGGGTTGTGTGCAATGACAGGAATGATGAGGAGATGCCGAACGCTGGCTCCAATGGACGCCTGCTGCCCAAAGGGAAGCTGGAGAAAGACTAAATGCATGTGGGCACGTTTTCCTAATATGTCCTCCTGGGACCAGCGGAAAGGCTCTTGAACGAGGAGGTCAGGGCTAGTTGTCACTCCAGGTTTAATTGAAGTCGTCTTCCGTGTCGAGATGCTCCTAGAATgtagtggaaaaaaatatataggtaaTTTtttggggcaagttgtcacaacGAGAACCCgattttttgctatatttaaatactaaaataattgtgAAGCACAAAATAGCATGAAACATAGCCAGTAGCATTATAGATTATAGTATTCAGATAAAGCATATTAGCAATTTTATAGTAGATAATAACACTACAATATTAGCGATATTcgtattgaataaatatatatatgacattttataatttttatattgatttaatttataaacgtttgtaattacacattcaaatgataaataataatactaataatatataattatatcatttaatttatgattGACCACATTAGGAGAGCTTGccctggtaaaaaaaaaaatatatatataaaaaatatatagtatcaACTTTTGCTTgagaacagcattttaaaaaaatatattaaaacaaacagctgGACTACatgtgtgacaactagcccgtCTCCTCCgactttatttgaatgtatcTATCGTATGAGGTCACATGATGTAGTTTCTAAATGGTTTAGTAATAATTCGCCTTACTGGCCCAAAAAGATTTGACAGAAAAGCCCAGGATGTGAACACGCGGACAGACTCGCACGCTCTCAGAGGCATAAACGTAAGAAAACCCACAACTTGCTGCTCCTCAGGGGGGTTTTGTACCAGCGTCACGCCCTCAGAGAAACGTTTCCTCCGAGAAACGAGGGTAGCTGCGTTAGCAGCCTTAATGTGCTTTAAACCTAATGTGTTCAAGACGAACCTCGCGGACTTCACGAATTACTAACGCAAATAACACCGCTGGGCTTTGATGGTTATCGAGTATTGGCCGTCTGGGTGATGGTTTTACTGCATGATGGGGTTTATGAGGACGGTCTCCCCTCGTAACTGCATGCGtcgggatttttttttttgcatgtggaGACCGCGGCATTGGTCCTGATAATGAGCCGCTCTGCTCGGACCGTAGCGAACCGATTGTGAGATAAACTGTGACTCTTCCTTTAGCTTTGAACGGGACGAGAGCAACCGAGTGCCTTCATTAACACTTCCAGGCAGCTGGACTTCTGTAACTCTTTTGAAATATTGCATCCGCACCGAAACGGGTTCAGGCGTGTCTCGGTTCATCTGCGATTAAAAACCAGGCCTCGGGGTGCGGAGTTAAAGAAAACCGATTTCACTCACGGCAGCTAAAGCCGAGCATCTCTCAGAGTATTGAGGCTTTCTCGATGGTCCAACTTTATTAAACACGTGAGCACCGCGCACTGTGAATGACTACCGTGACCTCTCACAAAAGAGCGGTTATTCCTCGTCTTCGAGACAAATTAGTCACGATTTGTTTGAGAGAAACTGCCAAAGCTTAGAATAATGAATTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250559.1 lncRNA upstream 118198 1112895 ~ 1127380 (+) True LOC122342413
TU36909 lncRNA upstream 312467 864840 ~ 933111 (+) True G24811
TU36856 lncRNA upstream 593985 649509 ~ 651593 (+) True G24768
TU36846 lncRNA upstream 620353 623251 ~ 625225 (+) True G24758
TU36839 lncRNA upstream 625882 619477 ~ 619696 (+) True G24754
TU37074 lncRNA downstream 38322 1286612 ~ 1287073 (+) True G24925
TU37102 lncRNA downstream 81175 1329465 ~ 1331843 (+) True LOC122342419
TU37142 lncRNA downstream 308102 1556392 ~ 1557778 (+) True G24968
XR_006250791.1 lncRNA downstream 422327 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 440688 1688978 ~ 1693389 (+) True G25071
XM_043237155.1 mRNA upstream 134059 970135 ~ 1111519 (+) True grm8a
XM_043237156.1 mRNA upstream 134059 1021037 ~ 1111519 (+) False grm8a
XM_043237157.1 mRNA upstream 276219 958334 ~ 969359 (+) True znf800b
XM_043237158.1 mRNA upstream 276219 958357 ~ 969359 (+) False znf800b
XM_043236945.1 mRNA upstream 288228 939160 ~ 957350 (+) True atxn7l1
XM_043237710.1 mRNA downstream 9443 1257733 ~ 1272088 (+) False waslb
XM_043237708.1 mRNA downstream 9444 1257734 ~ 1272088 (+) True waslb
XM_043237711.1 mRNA downstream 12107 1260397 ~ 1272088 (+) False waslb
XM_043236823.1 mRNA downstream 40007 1288297 ~ 1289481 (+) False ndufa5
XM_043236190.1 mRNA downstream 81162 1329452 ~ 1331032 (+) False LOC122342419
TU36860 other upstream 580048 654092 ~ 665530 (+) True G24771
TU36683 other upstream 871496 373527 ~ 374082 (+) True G24632
TU36680 other upstream 871754 373527 ~ 373824 (+) False G24632
TU36656 other upstream 950509 293235 ~ 295069 (+) True G24609
TU36577 other upstream 1160616 83688 ~ 84962 (+) True G24555
TU37077 other downstream 40022 1288312 ~ 1291224 (+) True ndufa5
TU37269 other downstream 422222 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 536002 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1867218 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1871239 3119529 ~ 3306758 (+) False erc1b

Expression Profile