RNA id: TU37077


Basic Information

Item Value
RNA id TU37077
length 2195
RNA type TUCP
GC content 0.40
exon number 5
gene id ndufa5
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1288297 ~ 1291224 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAAGTTGCGTTGTTGAGTCGCATCTAGGCAGACATGGCTGGTCTGATCAAGAAGACCACAGGCTTGGTTGGCCTTGCTGTCTCCAGCAATCCACATGAGCGTCTTCACGCTCTGTACACAAAGATCCTGGGCTCTCTACAGACTATGCCTCAGGATGCTGCCTACCGGAAATACACGGAGCAGCTGATCACCGAGAGGTTCAACCACGTCAAATCTGAGCCGGACGTGGAGAAGCTTGAAGAGAAGATCAGCTGTGGACAGATTGAGGAGGTCATTTCACAGGCCGAGGCCGAGCTGGCTTTGTCCAGGAAGATGAGCAAATGGAAACCGTGGGAGCCTCTCGTAGAGGAAGCTCCGGCAAACCAGTGGAAATGGCCCATCTGAAGCCTCATCATGCTcgtgtacatacatttatattaaataataaatcggCGAACGTTGTCCATTTAAGTTGCGCATTTTCTTAGATATTAAACTAGACCCAgcctaaaatgcatgtttgaatcGTCTCAACTTCTCAGccacttaaatataataatttaaccaTGCTTCGTTTGCGAAACCTGGCCCTTACGTCGTTGCCTGTGACTTAAACAGGCAGCAAGAAAGAAACTTGACTCAACGTATAACACGCAAGAATTCTGAAACACcgtttaaaatgttaagatcacacaaaacagacatattttagatcaaaatatgcatatttttaaatcgTATGCTTTTGGTTTAACATGTTTTATCGAATTTAGTCTCTAAACCTTCACTTTTATAAGAGCTGCAGTTATTAAGGATGTTACATGGAGACACTTTTGCGCAAAAAATTTCAATTCGCTTACATTTTGTGGTTAAGCAGTTTGGAACCTGTTAAGAAATGACAAACACCAGAAGAGATGATGTGCATGTAAATTCCTTTCCgttcatttttattgtgctttctTTCTTGTATCCAAGTACATCCTGTGTTAATGCTTGACAAAAGGCCTAAACGATTagacaatttaaataaaagtcgATAAATATTGGAGATAAATAACTGAATGGTGGTTACGAAACGGCGCAGAGATGATCTAAATCTAGAAGGATGCAGTAGgattattacaaattaagagTTGTACGTAAATGTCTGTTACAACATGACAActaagttaatttaaaaaaaaataaattctacaattaaaaaaaatcgtgGAATTTCTACAACAAAACACTGAATTGCTACAATAAcaaacatagtaaaaaaaaaagatgctagTCATATAAACTGTTTTGGTCTGTTGGTGTGGCCGGTGGTTTTATATATTAGAAGCACACCTCTCTCTTTACTATGAGGCTACATTCAAGAACGCTTtatatctaagatttttttattacccCCAAAATAGATACCGTATGAAATCATCTGCCCTGCTACTTATAAATATTTCTTCAACAGTTACGTCTGACTAAACCTAAAACATCACCAGCAACACAGCGGTCGCTGCTTTTCCAAAGAGTAGAAATTTTGGCATTAGttacaacaataatattatatcaAAGCGTTTTAAAGTACAAAGGTAACAAAAAGGCACAATAAAAGACCAAATGACGGTATGTCCTGTAACCCACGTAGTCCGTGCAGctaaaaatgactttctctTGATTCAATGTACATTTCCTTGGGTGAAGGGTGACGGTGCTCTGTGTGGCTACATCAGAGACTCCAGGCTTTCTGAAGGGTTGGCGGGAACCGTGCCGTTGTTTTCCGAGTAATGAAGAGCCTTCTCATCCTCCTTGGTGCTCACCAAGCTCAGGATCGCTTTGTAGAGGAACTGATACTGATCCTGCGGGAGGAAGTCACGGGAAAGGTTTACACAACGTAAAAATGTACTCGCCACAAGAGCTTGTTCCTTCGTCAGATTTGGAGAAGCGTCGCCGctttgctctgcagtgaatgggtgccgtcagaagggGAGTCCAAACGGCCGATAAAAACACCGCAATACAAaacactccagtccatcagttaacatcttctgaagcagaaaaggctgtttttgtaaaaaaaaaatgtttttggcagAAATAAAAGTCCCACGTCAAAATACATaaactgtttttgcttgtattTGTGCAGACTTCTCTTCTGATTGAGTGGAGtagactttttcactggagaaagcaatattacgaATAAAGGAGTCGTATATTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37074 lncRNA upstream 1239 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 39143 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 160932 1112895 ~ 1127380 (+) True LOC122342413
TU36909 lncRNA upstream 355201 864840 ~ 933111 (+) True G24811
TU36856 lncRNA upstream 636719 649509 ~ 651593 (+) True G24768
TU37102 lncRNA downstream 38241 1329465 ~ 1331843 (+) True LOC122342419
TU37142 lncRNA downstream 265168 1556392 ~ 1557778 (+) True G24968
XR_006250791.1 lncRNA downstream 379393 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 397754 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 493013 1784237 ~ 1787234 (+) False LOC122342451
XM_043237710.1 mRNA upstream 16224 1257733 ~ 1272088 (+) False waslb
XM_043237708.1 mRNA upstream 16224 1257734 ~ 1272088 (+) True waslb
XM_043237711.1 mRNA upstream 16224 1260397 ~ 1272088 (+) False waslb
XM_043236306.1 mRNA upstream 40022 1245578 ~ 1248290 (+) True LOC122342481
XM_043237155.1 mRNA upstream 176793 970135 ~ 1111519 (+) True grm8a
XM_043236190.1 mRNA downstream 38228 1329452 ~ 1331032 (+) False LOC122342419
XM_043236338.1 mRNA downstream 54961 1346185 ~ 1351673 (+) True zgc:162331
XM_043236330.1 mRNA downstream 61179 1352403 ~ 1366070 (+) True c4h12orf56
XM_043236325.1 mRNA downstream 75495 1366719 ~ 1368745 (+) False ssbp1
XM_043236326.1 mRNA downstream 75629 1366853 ~ 1368745 (+) True ssbp1
TU36860 other upstream 622782 654092 ~ 665530 (+) True G24771
TU36683 other upstream 914230 373527 ~ 374082 (+) True G24632
TU36680 other upstream 914488 373527 ~ 373824 (+) False G24632
TU36656 other upstream 993243 293235 ~ 295069 (+) True G24609
TU36577 other upstream 1203350 83688 ~ 84962 (+) True G24555
TU37269 other downstream 379288 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 493068 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1824284 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1828305 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 2147907 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile