RNA id: XM_043236190.1


Basic Information

Item Value
RNA id XM_043236190.1
length 501
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC122342419
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1329452 ~ 1331843 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCAACCGCTTGCGTCATCAAACGGCGACACGTTAAATTGCCTTACCTCCTACACGATGAACGCGTCCTTGGGGCTCTTTGCCCTTTTGAATATGACTTATTAACACTTATTCGTTTAATAACTATTACAGCAAGTACGCGAAGTGATGAACCGTCTTTGACAGACCGTGAAGAGATGAGCGCTCCTAACGCCAGCGAACGCAAAGCCTGCTGGGACGCCAGGGACGAGCTCTGGAGGTGTCTAGACGACCATCAAGACCAAACATCTGCCTGTGAGAAACACCAGCGAGAGATTGAAGCCAGGTGTCCTGCCCAGTGGGTGAAGTATTTCGCCAAGCGGAGGGACTTCTTAAAGTACAAGGAGAAACTCCAGAATGAGGGCTACGAGCCAACAGAAGGGGCCTCAAAATTATAGacgtaatataaaataaaaggctGGACTCTGTGTGGAGCTTCGGCGTGATGTGtctgaaaagcaaaataaacGAATGACCcaaaaa

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37074 lncRNA upstream 42379 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 80283 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 202072 1112895 ~ 1127380 (+) True LOC122342413
TU36909 lncRNA upstream 396341 864840 ~ 933111 (+) True G24811
TU36856 lncRNA upstream 677859 649509 ~ 651593 (+) True G24768
TU37142 lncRNA downstream 225360 1556392 ~ 1557778 (+) True G24968
XR_006250791.1 lncRNA downstream 339585 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 357946 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 453205 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 457599 1788631 ~ 1789276 (+) True G25030
XM_043236823.1 mRNA upstream 39971 1288297 ~ 1289481 (+) False ndufa5
XM_043237710.1 mRNA upstream 57364 1257733 ~ 1272088 (+) False waslb
XM_043237708.1 mRNA upstream 57364 1257734 ~ 1272088 (+) True waslb
XM_043237711.1 mRNA upstream 57364 1260397 ~ 1272088 (+) False waslb
XM_043236306.1 mRNA upstream 81162 1245578 ~ 1248290 (+) True LOC122342481
XM_043236338.1 mRNA downstream 15153 1346185 ~ 1351673 (+) True zgc:162331
XM_043236330.1 mRNA downstream 21371 1352403 ~ 1366070 (+) True c4h12orf56
XM_043236325.1 mRNA downstream 35687 1366719 ~ 1368745 (+) False ssbp1
XM_043236326.1 mRNA downstream 35821 1366853 ~ 1368745 (+) True ssbp1
XM_043237823.1 mRNA downstream 38360 1369392 ~ 1385823 (+) True creb3l2
TU37077 other upstream 38228 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 663922 654092 ~ 665530 (+) True G24771
TU36683 other upstream 955370 373527 ~ 374082 (+) True G24632
TU36680 other upstream 955628 373527 ~ 373824 (+) False G24632
TU36656 other upstream 1034383 293235 ~ 295069 (+) True G24609
TU37269 other downstream 339480 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 453260 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1784476 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1788497 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 2108099 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile