RNA id: XR_006250569.1


Basic Information

Item Value
RNA id XR_006250569.1
length 1376
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC122342451
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1784237 ~ 1788096 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTTCATCCGCTCCTGAAGGCGGCGCCCGCGGGTTCACCTTCAGTCTCAGCCTCGGCTGCTTGATGCCAGTCACAACAACACGTGCGCTTCCTGCGGGCGACAGCTCTTAATATAAAGAACAAGCGCTGATCTGAAGATTGTAAAGCTGTGCTGGTGGACAGACCGTCCAAACACATAACCGCTGCTGGCCGTGACTCCGGAAGCTCCAGGGGGAGACTGTAACTGTCTCCCCCTTCTTCAGGCGCTGCTTCACACACTGtccctcctcacacacacacacacactccagcatTCACCCGTAACGCAGAGACCTGGCCGGGATTGAACCAGCAACCTCTGAACCGTGAGGCGGTGCTCTTACCAGTGAGCCACAGGTCTCTTGTTGAAGAACGTGAAGGAACTTATATTTGACTGTTGATCCAATCCTGAGTTCTCAATAAAGATATTTGAGTGACTTTAATTTAAAGCTGATTTAAGCGACTGTGGGGTTCAAAGTTTGGGGTTAAACGCTTTAACCACTGAGCCACAGTGAATGTTGTGTTATAGTTTGACATTTGAGTTGTTGTAGGATGAGATCAACTTAAAGCAAGCAATAGCTGGGTTTGAACTCAGATCTTCTGGATCAAAGCACACAGCTTTAACACATGAGCTACTGAGTCTGGAGATCTGAAGCACGTCTCTCACACTTGAGATCGAGATCTTTAACCACTGAGGTTTAGGctgaatgaaaaacattcaGTACAACTGTGGGatttgaacacaaacacactgcagcTCCATGAATCAAACACTCAGGTTTAACAGCAGGGCTTGAACCTGGACTTCTGTGTTTGGGGTTGAGTGCTTTAACCACTGAGCCACAGAGAGCGTCTTGGCACTCACTTCTTATATTCAGGGTGGTTTCAAGTTTGCTAGATTTGATTCAGCATTCACCACAGAGATTGTGTTAAtcgtatttaaattaattatctATTACATTATCATTCTTACCAtcatttttgtaactttaacTTCAAGACTAGTGcactttcttttcttaaaacataaaCTCGAGaatatataagtattatatattcGAAATATCGAAGTATTATCAGTCTTAATGAAAGTTGTTCTCAAGCTTCTTAAAGCGCGCCCTCCTGTGGTGATTTCTATGAACTGAATCACTTCAAAGTGAATCTAATAAACGCACTAAATCTCTGTAAGAGGGTGAGAGCACATGGCGCAGTATTTCAGTATGAACTGAtgtatatacttaataaaaattacactctttctctattataggagaagaagacttgtataaacttgttaaatcatctaaaccagcaacatgtatgttagaccctattccatctaaactattaaaagatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37284 lncRNA upstream 90848 1688978 ~ 1693389 (+) True G25071
XR_006250791.1 lncRNA upstream 111477 1670617 ~ 1672760 (+) False LOC122343488
TU37142 lncRNA upstream 226459 1556392 ~ 1557778 (+) True G24968
TU37102 lncRNA upstream 452394 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 497164 1286612 ~ 1287073 (+) True G24925
TU37231 lncRNA downstream 1397 1788631 ~ 1789276 (+) True G25030
TU37306 lncRNA downstream 43444 1830678 ~ 1830968 (+) True G25086
XR_006250555.1 lncRNA downstream 112662 1899896 ~ 1901886 (+) True LOC122342405
TU37447 lncRNA downstream 118596 1905830 ~ 1906106 (+) True G25192
TU37451 lncRNA downstream 119966 1907200 ~ 1908927 (+) True G25193
XM_043237558.1 mRNA upstream 554 1762143 ~ 1783683 (+) False strip2
XM_043237556.1 mRNA upstream 554 1762189 ~ 1783683 (+) True strip2
XM_043237557.1 mRNA upstream 554 1762190 ~ 1783683 (+) False strip2
XM_043237559.1 mRNA upstream 554 1762245 ~ 1783683 (+) False strip2
XM_043237560.1 mRNA upstream 554 1769289 ~ 1783683 (+) False strip2
XM_043236919.1 mRNA downstream 5073 1792307 ~ 1797892 (+) True si:dkey-14d8.21
XM_043237780.1 mRNA downstream 13252 1800486 ~ 1804566 (+) True LOC122343361
XM_043237778.1 mRNA downstream 18355 1805589 ~ 1808700 (+) True LOC122343360
XM_043237779.1 mRNA downstream 18596 1805830 ~ 1808700 (+) False LOC122343360
XM_043237781.1 mRNA downstream 22058 1809292 ~ 1816478 (+) True mapk11
TU37269 other upstream 111278 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 493013 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1118707 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1410155 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1410413 373527 ~ 373824 (+) False G24632
TU37871 other downstream 1328274 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1332295 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1651897 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1653678 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 1659824 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile