RNA id: XM_043236889.1


Basic Information

Item Value
RNA id XM_043236889.1
length 3666
RNA type mRNA
GC content 0.45
exon number 10
gene id selenoo2
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1594284 ~ 1604690 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCCCAAAGTGTCACACCACTGCAAAGACTGAAGTTTAACAATGTTGCATTGAAAAAACTCCCTCTAGATTCGTCACTAGAACCGGGCTCACGGATCGTGGCAGGAGCGTGTTTTTCCCGTGTCCAGCCACAGCCGCTGCTCAACCCAGCTTTCGTCGCCATATCCGAGCCGGCTCTCGCTTTACTGGGACTGAGTGTGGACGATGTTTTACCTGACCCACACGGGGCGGAATATCTGAGCGGCTCTCGGATGATTCCGGGCTCCGAGCCCGCTGCTCACTGCTACTGTGGACACCAGTTTGGCCAGTTCGCCGGGCAGCTGGGTGACGGTGCTGTGTGTTATTTGGGGGAGGTGGAGGCCGGTGCTGAGCAAAGTTCTGACCCGACCAAGAGAACCCCTTGTGGCCGGTGGGAAATTCAGGTTAAAGGCGCTGGGCTGACACCTTATTCTCGGCTGTCTGATGGGCGTAAAGTGCTCCGCTCCAGCATTCGAGAGTTCCTGTGCAGTGAGGCCATGTTTGCACTGGGAATTCCCACAACACGAGCAGGATCACTGGTGACCTCTGATCTTTATGTCCAGAGGGATACGTTCTACAGTGGCAATCCCAGACCAGAGAGGTGCTCAGTGGTTCTCAGAATAGCACCCACCTTTATCAGATTTGGCTCGTTTGAGATCTTTCACCCTGTGGACGACTTCACTGGAAGACATGGCCCGAGTGTTGGACGACCTGACATCCGAGCACAGCTTCTGGATTATGTCATTGAAACATTCTACCCTGAGACACAAATAAGATATTTAGACCGCCTAGAGAGGAATGCTTCCTTCTTCAGAGAGGTGACCGTGAGGACCGCCAAACTGGTTGCCCTGTGGCAAAGTGTGGGATTTTGTCATGGAGTTCTCAACACAGACAACATGAGCATCTTGGGCCTCACTATAGACTACGGCCCATTTGGCTTCATGGACAGGTTTGACCCTGAGTTCGTGAGCAATGCCTCTGATAAGAAACAGCGTTACTCTTATGAAGCTCAGCCATATATATGCCGCTGGAACTTGGCACGTTTGGCAGAAGCTCTTGGCTCGGAGCTCCAGTCATCCAAAGCAGGGGCCATGTTAGATGAGTTCATGACCATTTATCAGGACTTCTACATGTACAACATGAGGAAGAAGCTGGGTCTTCTGAGACAACAAGAAGCAGAGGATGTAGAACTGGTGGCGGATTTATTAAAGACCATGCACATCACAGGTGCCGACTTCACAAACACATTTCGTCTGCTGAGTGCTGTGTCCTGTCCTATAGGTGAACAGAAAGACAGCACAGACTCAGTAGTGGAACTGATCATGGAACAGTGTGCCTCGCTGGAGGAACTAAAGCACGTTGCAAGAAAGGCAAGGCAAGAGAATTGTGAGTTGGAGATGATTCTGTCCATGGCTGACACAAATCCAGGTATGTTTAACATGGTAGCTAATCAGCCAGAGGTTGCCAAACAACTGGAGAAGATTGGCAGGCTGAAGGAGCTTTTCACGATCAATGAGGCGGAGCTAAAAGTCAAGCAGATAGATCACTGGCAAAGATGGGTCAAACTATAcagGAGACGTCTGGCCCGTGAATGTGACGCAGCAAGTGACCCTGCAGAGGTAGAGAAAGAGCGGGTCGAAACTATGAACTCCACTAATCCTGCCATTGTGCTGCGGAATTACATTGCCCAGAATGCAATTGAAGCTGCTGAAAAGGGGGATTTTTCAGAGgTTCAACAGCTGCTTAAGGTTTTAGAGAACCCTTATTTGTTCAGTCGAGATCTGGAGCATCAAGTATGGTCAGCAGGAATTGGTTCAGACCAAGCTGATGGCAACAGCATTAAGAGACAAGAAGTTAAGgagaacacaaaaagaaaagcagcaacTGATACGCACCAGATACCATACAACAGTAAACCTCCATCATGGGCTAGAACgatctgtgtcacatgatcatccTAAAGCCTCCCAAACATCACAGCCCAGTCCAAAACAGAAAGCTTAAGCAACACACAGCACTCCATATCAGATAAAGCGGAAATGTCTAGATGTTAATAGGTATAATAAACAAGGCATAATTTctgttcaattaaaaatatgttttattactaTGAAATTGAGAAACagattaaattattcatattttaattaacctttagttatttttgcaatatCTGATTAATGAAGACTCTGATGTTCAGCTTAGCAGGCCTGTCTGAGTTTGAATAACAAGGAGTGTCTTGTGCATCATATAACCACATATCTTTAATTATTACCCATCAATTTTAATAGATATTTCAAAACGTAATAGCTTAAACAAAGTATTATGTAGAAATATGACAAAATGTCCAagactttttttctgcaaacattaaaaatggttttcttgtttctattttttaaatcttggtAAACACTATAAAAGTAGTCTATAAAAGTCTTCTGAAAACTTCCATAATAAATTTAGTGAGtggcatatttaattaaaaagagatatatgaaatgcaaataCACTTAGccacaaataagtaaatcaTTTCTGTGGATTTTGTTTCTACttacaatatttgaaataaatgttcacttaatgtcatgttttttgcctccacaattttatttcatgtgaTTATGAACAAATAGTTAAATTTTTGAAGCATAAATTTCATCTGAATTTTATGATAGTAACAGTATAGAACCTCCTGTCCATATAAATCTATGTATAGTTCTAATATAATGAGCTGAACATGATTTCACATATATTTGGATTGAAAAGGAAACTACGgccgaatgctgttcattgacttcagttcagcatttaacaccatcatccctcagcagCTTATAGAGAAGCtctgaacacctctctctgtaactggatcctggactttctgacacGCAGACCTCAATCAGTccggatcgggaacagcatctccagcaccaccacactgaacactggagatcctcagggctgtgtgctcagtccactgctgttcactttgctgactcacgactgtgcagcgatgcacagctccaatcacatAATCAGATTCGCTGATGACACgaccgtggtgggtctcatcagcaagaacgacgagtcagcatacagCGATGATATGCAGCAGTTTTCAACatggtgtagagccaacaatctatctctgaatgtCGACAAGACcaaggagatgattgttgacttcaagcgagcaaagagtgaccatCCTCCGCTGTCTATTGCGGATCCAGGGTGGAGACTGTCAggagcaccaaattccttggtgttcatctggtggataacttcacctggtcactcaacaccagctccatcaccaagaaaacCCAGCAGTGCCTCTACTtcctgaggaggctgaggaaagctcatctccctccacccatcctgactatgtttTATAGAgggaccattgagagcgtcctgtgcagctgcatcactgcctggtttgggaattgcagTGAATCGGATCACAAGACCCTTCagaggatagtgaggacagcttAAAAGATCACtggcgtctctctgccctcaCAGACATCTACACCACACACTGCATCCACAAAGCGCACAATATAACACATGACCCTTCACACACACTATTCAGAGGACATCCGTTTACAAGTACTTTGAATTATTCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37317 lncRNA downstream 11670 1580480 ~ 1582614 (-) False LOC122342802
TU37318 lncRNA downstream 16559 1577201 ~ 1577725 (-) True G25098
TU37229 lncRNA downstream 17568 1576061 ~ 1576716 (-) True G25028
TU37228 lncRNA downstream 18865 1570293 ~ 1575419 (-) True G25027
TU37215 lncRNA downstream 113391 1478609 ~ 1480893 (-) True G25019
TU37348 lncRNA upstream 60001 1660605 ~ 1661388 (-) True G25124
TU37349 lncRNA upstream 61741 1662345 ~ 1662607 (-) True G25125
TU37350 lncRNA upstream 62469 1663073 ~ 1663900 (-) True G25126
TU37351 lncRNA upstream 65234 1665838 ~ 1666137 (-) True G25127
TU37364 lncRNA upstream 87754 1688358 ~ 1688894 (-) True G25133
XM_043237040.1 mRNA downstream 915 1591389 ~ 1593369 (-) True LOC122342889
XM_043237039.1 mRNA downstream 2979 1588279 ~ 1591305 (-) False LOC122342888
XM_043237037.1 mRNA downstream 2979 1588279 ~ 1591305 (-) True LOC122342888
XM_043236918.1 mRNA downstream 8095 1580880 ~ 1586189 (-) True LOC122342802
XM_043237930.1 mRNA downstream 31737 1532051 ~ 1562547 (-) False ano2b
XM_043236891.1 mRNA upstream 1071 1601675 ~ 1603713 (-) True LOC122342781
XM_043236884.1 mRNA upstream 8756 1609360 ~ 1618296 (-) False zgc:113263
XM_043236883.1 mRNA upstream 8756 1609360 ~ 1618296 (-) False zgc:113263
XM_043236881.1 mRNA upstream 8756 1609360 ~ 1618295 (-) True zgc:113263
XM_043236882.1 mRNA upstream 8756 1609360 ~ 1618294 (-) False zgc:113263
TU37001 other downstream 524188 1069160 ~ 1070096 (-) True G24875
TU36940 other downstream 661176 908946 ~ 933108 (-) False pik3cg
TU36783 other downstream 1403042 186460 ~ 191242 (-) True G24708
TU36763 other downstream 1520798 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 1560368 28072 ~ 33916 (-) False LOC122343420
XR_006250650.1 other upstream 8756 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other upstream 8756 1609360 ~ 1618298 (-) False zgc:113263
TU37319 other upstream 52987 1653591 ~ 1654807 (-) False ccdc167
TU37444 other upstream 301239 1901843 ~ 1902567 (-) False rsph9
XR_006250653.1 other upstream 442349 2042953 ~ 2088579 (-) True cald1a

Expression Profile