RNA id: TU37397


Basic Information

Item Value
RNA id TU37397
length 1394
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G25152
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1749378 ~ 1752092 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taaaactgcaATACTGTAAAttgattataatttaaaataactgatttatatttaacttttttaaattgcttaagTTTAAagtgtgatgcaaagctgaaattcTAGCATtccagtcttcactgtcacatgaaatcattcaaatatgctgattttataattcatttataattaatatacacatacatacataaaattattaCGCACACATAAATAATGGTTATTATAACAatgtttgtaatgcattatagtTCAAATCACACTTGCCAGTTCCACTACTTGCCCCTAGATGGAGACATTCGCTTTTGATATGAAACAAAAGTCGCACTCCCCACATTTTTCACTTAACCCGGAGCAAATGCCAAAAATGTAATACCACTTTTATGCTTTTAACAAACTAAAGTCTTTCACAAATGACCATAATCACCTGTGAACTCCAGTAACGCTCTCCTCTACGATGCCTTTGATCTTTTTAAACATGTTGGGATATTTCTTATAGATCCAGTGAGTCAAATCTCCTCCATCGTCTAAAATCTATGAGACATAAGCTGTTGAGACATCGAGGAGTCATAACATTCAACTTCTCTATATGCATCTAGTTCAGCTACCATGTTGGGCTGCCAGCCTTCCACATTAACACAGCGATCGATACACCACCAGAAATCATCCTCCGATTCACCCTTCCAGGCAAACACTGAGAAACCTGCCAAAGATGACACGCAGGGGTTCATCGggacagaaaaatatgaaagggCGCAAACGAAATGGGagtaagaaaagaaaaatatttacctCCCTCGGCCAGAGCGGCTGCTACTTCGTTTTGAGTGGAGTAGATGTTACAGGCGGCCCACCTGCACTGAGCACCCAGAGCGGAGAGGGTCTCCATCAacacctgcaaacacacacacacacacacacacacacacacacacacccacgaTGCATTACTGAAACACAGATGTCAGTCTGCTCTCAAAAACAAGCTCAAATATAGTATGACGGTTCCTAAATGGGCAGAATAAAGTGTTGAGGTAGGATTAGGGAGTTAGAATTATAgtgtcatttcatttaattagtttaatttaagaacaaatgaagttAATATTAGGTATGCGAGTGTATTTTCGTGTGTGCATGTACAGAAACTCACAGCAGTCTGTGCAGTGATGTGGGTGCAACCCACAATTTTGGCTCCAGCCAGCGGCTTCTCTCCCTGAGCTCTCTTCCTCAACGCCATGAGAGCAGGCATCTCTGCTCGGCAATCTCGATCTCCCTGCGTCCGAAGTCGGCCTGTTTGATGTTCTTTATGCAGAAGTCTGCATTGCCCTTGGAGTTCTTCTGCTGCTTGTCGCGTGGAGAGGTTTCATCATCGGAGCTGTCGGTGTACGAGGcag

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37370 lncRNA downstream 33114 1715911 ~ 1716264 (-) True G25137
TU37365 lncRNA downstream 57053 1689008 ~ 1692325 (-) True G25134
TU37364 lncRNA downstream 60484 1688358 ~ 1688894 (-) True G25133
TU37351 lncRNA downstream 83241 1665838 ~ 1666137 (-) True G25127
TU37350 lncRNA downstream 85478 1663073 ~ 1663900 (-) True G25126
TU37399 lncRNA upstream 267 1752359 ~ 1753641 (-) True G25153
TU37413 lncRNA upstream 25980 1778072 ~ 1782025 (-) True G25163
TU37418 lncRNA upstream 36537 1788629 ~ 1789562 (-) True G25166
TU37426 lncRNA upstream 55927 1808019 ~ 1808342 (-) True G25173
XR_006250585.1 lncRNA upstream 73094 1825186 ~ 1829588 (-) True LOC122342506
XM_043236188.1 mRNA downstream 40581 1705449 ~ 1708797 (-) False tigarb
XM_043236187.1 mRNA downstream 40583 1705449 ~ 1708795 (-) True tigarb
XM_043237589.1 mRNA downstream 51987 1693551 ~ 1697391 (-) True fgf6b
XM_043237838.1 mRNA downstream 62099 1685129 ~ 1687279 (-) True fgf23
XM_043237568.1 mRNA downstream 65805 1680949 ~ 1683573 (-) True rad51ap1
XM_043236622.1 mRNA upstream 99151 1851243 ~ 1862194 (-) False vegfab
XM_043236621.1 mRNA upstream 99151 1851243 ~ 1862194 (-) True vegfab
XM_043236624.1 mRNA upstream 99151 1851243 ~ 1862192 (-) False vegfab
XM_043236623.1 mRNA upstream 99151 1851243 ~ 1862190 (-) False vegfab
XM_043236174.1 mRNA upstream 146311 1898403 ~ 1902663 (-) True rsph9
TU37319 other downstream 94571 1653591 ~ 1654807 (-) False ccdc167
XR_006250650.1 other downstream 131080 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other downstream 131080 1609360 ~ 1618298 (-) False zgc:113263
TU37001 other downstream 679282 1069160 ~ 1070096 (-) True G24875
TU36940 other downstream 816270 908946 ~ 933108 (-) False pik3cg
TU37444 other upstream 149751 1901843 ~ 1902567 (-) False rsph9
XR_006250653.1 other upstream 290861 2042953 ~ 2088579 (-) True cald1a
XR_006250644.1 other upstream 550235 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other upstream 552254 2304346 ~ 2375716 (-) False dock4b
TU38086 other upstream 1268970 3021062 ~ 3021457 (-) False LOC122342805

Expression Profile