RNA id: TU37610


Basic Information

Item Value
RNA id TU37610
length 488
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G25309
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2283290 ~ 2283777 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccaaacttctcctctccagccatccaacaacatgtccgctagaccccataccctctcatctcctgcaagcaatctcccccactgtcttgccggcactcacgcacatcatcaacacatctctcctcacaggtaccttccccacagcatttaagcaggctcgggtaaccccactgctcaaaaagcccactttaaacacttctcttattgataactacaggccagtctctcttcttccattcatagcgaaaacacttgaaagagtggttttcaaccaggtatcactgtttctttcgaaaaacaacaaactggaccataaccaatcaggtttcaggtgcggccattcaactgagactgcgctgctctcagtcacggaagccctgcggactgcaagagctcaatccaaatcatcagttctcattctgctggatctatccgctgcttttgacactgtgaatcatcagatcctgctgtctaccctctcatcactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37601 lncRNA upstream 115293 2167733 ~ 2167997 (+) True G25300
TU37589 lncRNA upstream 176196 2106763 ~ 2107094 (+) True G25288
TU37531 lncRNA upstream 232338 2049224 ~ 2050952 (+) True G25249
XR_006250654.1 lncRNA upstream 250241 2028796 ~ 2033049 (+) True LOC122342875
TU37535 lncRNA upstream 251226 2028804 ~ 2032064 (+) False LOC122342875
TU37613 lncRNA downstream 4403 2288180 ~ 2301771 (+) False G25310
TU37615 lncRNA downstream 15863 2299640 ~ 2302399 (+) True G25310
TU37619 lncRNA downstream 20191 2303968 ~ 2305859 (+) True G25313
TU37637 lncRNA downstream 118668 2402445 ~ 2402674 (+) True G25327
TU37640 lncRNA downstream 121397 2405174 ~ 2405397 (+) True G25330
XM_043237924.1 mRNA upstream 93542 2178532 ~ 2189748 (+) False LOC122343453
XM_043237923.1 mRNA upstream 93542 2178533 ~ 2189748 (+) True LOC122343453
XM_043237015.1 mRNA upstream 260980 2001089 ~ 2022310 (+) True utp20
XM_043236224.1 mRNA upstream 287754 1994240 ~ 1995536 (+) True lyrm5a
XM_043238038.1 mRNA upstream 289702 1990505 ~ 1993588 (+) False usp18
XM_043237518.1 mRNA downstream 105202 2388979 ~ 2394441 (+) True ifrd1
XM_043237879.1 mRNA downstream 222169 2505946 ~ 2602501 (+) True foxp2
XM_043237878.1 mRNA downstream 254242 2538019 ~ 2602501 (+) False foxp2
XM_043237880.1 mRNA downstream 254242 2538019 ~ 2602501 (+) False foxp2
XM_043237770.1 mRNA downstream 338762 2622539 ~ 2641837 (+) True mdfic
TU37230 other upstream 495194 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 610331 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 992066 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1617760 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1909208 373527 ~ 374082 (+) True G24632
TU37871 other downstream 831731 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 835752 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1155354 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1157135 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 1163281 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile