RNA id: TU37613


Basic Information

Item Value
RNA id TU37613
length 2153
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G25310
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2288180 ~ 2302399 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttTTCTGGTTGGAAATGTTTATTAGACAGGAAGTCATTAGAATGTAAATGTGTTAGGCGCTTTCTCGACCTCATTTCCCTACGCTCacaacatacataaatatttgacatttatcaTCTTAATTTGCTGTTCAAACATTCAAAGCTGTAAATTTGTTATAGCTACACTTCTGTTAAAAACACGTTATGTACAATAGACGAGATATTGCATTTGGCATAATTACAACAATCTTGTTATTTCATGTACAGTACTGATTTTTGCGAGCGCCGTCATTTGGCATTCGCAACAAATCCCAGTCTCGTAAAATGCGACCGTAAAAAGGACAAAGCAATCATAGTCGAGTTAATTTGAGAATTAATAACAGCAAACGAATGAGGACGCTGTACTGCGATCACATTTTCCACTAAAACGAAACAATAGTATATTTGCCCGGGTTGCATTTGCAGAATTGTAAACGTGGAAATATTCGGACGACTGATGAAACTGTGCATGCAGAAACATTCCTGGACATTTCGCAACCATGTGTTGGCGTCTGTGCATGTTAAATAATCGTTATAGACGGTCGCTTCACCTGCATTTCATACAGGTAAATGAAAGATGAGGTGCAGTCCAGAGGTGCCAATCCAAATTTGACTGGAACGCATGAGTTTAGATTAGAAGTGTGAACAGGAATGGCAGCCCTTTATTGCCCAATGGCAGCTCGAGTCTCTGTAATGCCCTAGGTTGATCAAGTACCTTTCATATGAAGCTCTTTTACCAGGCTATATCACTTCGTCTCACTGTCTTTTAGACAGTATGCTGTAAAGTGGTCCGGTGCACCGTGAGTTGTACGGTGAAGTCTATTACAGTGGATGTCTAACGCTCCATTTGCATCCTAATAAAGCATCTTCGGGTTCAAGACATCCATTTTCCTTACAGCCCACCTGTTCCTTTGGCACAACACTTGGCAAAACTCCACTAAAGTCCATCTCCGTTTATAACGCGTGGGCATGTGCGCTTGGTACGGAAACCCTTGTTGGGAATTTTTCGCACCACCTACACGAGTTCCGATCATTCAGACCCCAAACCCCTCAGAAATCCATCCATGCTGCTGGGCTCTGAAAGCCCCTATAGACTCGCCCACAAGCGGTCTCTAATCAGTCAGACCCCAAACTCCAAAGAATCTATCAATGCTGTATGGCTTTGAAAGCCCATATCGACTCTCCCACAATTGCGTTCCAATTACATAAATGGGCTCAAGGTACAACTTCACATTAGTCAATGCAAAGGTGGCAGTTCatacagtgaaatgttttttttttgacgaatCGATGAAAGCTCTTTGCTTGTGGATTTTTAGTAATGAGAATAGAGACTATGGTAGCTTGGTCTTACAAAAGCAGCAACCTATCTAAAGGCCTATTCACACGGAATGCGagcttcctctttttttttttaagtgacctGTCGAACTGCAAATAAAActtactgaatttttttttatttatcgcTGCTGATGCACCTACTGCAACCAGAATTAAACATGTGACTATTGAAGTCTATGCACACCTCTTTTTGAACACGACAATGGCATAAGTAATTCTAGTTTGTGAACTCTTTGTAATGCAGACATAAACCCAGTGTCCTTTAAAGGTCCActaataaaatatgtgcatataaaataaatgtgcataaatataaaCCCACAGGGCACATGGGAATTTGAGCAAAGGTGCACTAAACAATTACATATAATGCCAATGCAGGAAAGTGAATTTAATGCAAATCTGCAAtgaataacattattttatggaCTAATGTGCTAGTTTTCGCATTCGGTGTGAATAGGCCTTTCGACCCCAAGTTAAATGCAATCCTGAACATATTGTGCTAACATTAAAGAGGACTTTTAGCACCTTTTGTCTCAAAGTACAAAGTACTTTTAATCGTGCATTTCTCATTGATAAAAAGACTCTTAAGGCAAACATGTCTTGTATCAACttctataaatacacattagcatctatgaaaaaaatctgtgaaaataCCACGGTACTAAGTTCTGTTTAGAGTTAATTAAGGGGCTCGGGTTACTTGACAAGCAAAGTTATAATTTTGGAcctaaaaagtgcattaaacgCAGTCATACCCTTGTTTCCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37610 lncRNA upstream 4403 2283290 ~ 2283777 (+) True G25309
TU37601 lncRNA upstream 120183 2167733 ~ 2167997 (+) True G25300
TU37589 lncRNA upstream 181086 2106763 ~ 2107094 (+) True G25288
TU37531 lncRNA upstream 237228 2049224 ~ 2050952 (+) True G25249
XR_006250654.1 lncRNA upstream 255131 2028796 ~ 2033049 (+) True LOC122342875
TU37619 lncRNA downstream 2197 2303968 ~ 2305859 (+) True G25313
TU37637 lncRNA downstream 100674 2402445 ~ 2402674 (+) True G25327
TU37640 lncRNA downstream 103403 2405174 ~ 2405397 (+) True G25330
TU37641 lncRNA downstream 105800 2407571 ~ 2408937 (+) True G25331
TU37642 lncRNA downstream 107198 2408969 ~ 2410645 (+) True G25332
XM_043237924.1 mRNA upstream 98432 2178532 ~ 2189748 (+) False LOC122343453
XM_043237923.1 mRNA upstream 98432 2178533 ~ 2189748 (+) True LOC122343453
XM_043237015.1 mRNA upstream 265870 2001089 ~ 2022310 (+) True utp20
XM_043236224.1 mRNA upstream 292644 1994240 ~ 1995536 (+) True lyrm5a
XM_043238037.1 mRNA upstream 294592 1990508 ~ 1993588 (+) False usp18
XM_043237518.1 mRNA downstream 87208 2388979 ~ 2394441 (+) True ifrd1
XM_043237879.1 mRNA downstream 204175 2505946 ~ 2602501 (+) True foxp2
XM_043237878.1 mRNA downstream 236248 2538019 ~ 2602501 (+) False foxp2
XM_043237880.1 mRNA downstream 236248 2538019 ~ 2602501 (+) False foxp2
XM_043237770.1 mRNA downstream 320768 2622539 ~ 2641837 (+) True mdfic
TU37230 other upstream 500084 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 615221 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 996956 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1622650 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1914098 373527 ~ 374082 (+) True G24632
TU37871 other downstream 813737 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 817758 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1137360 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1139141 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 1145287 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile