RNA id: TU37644


Basic Information

Item Value
RNA id TU37644
length 522
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G25334
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2412063 ~ 2412584 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAGACGCCATACTGAATTTAATACACGTGAGAATTAAGAGAGATAGACTTTAAGCGTTTACAATGAACCTGCACTACTTCTACCCCTCACAGCCTTGCTTTCATTCatgtcaaaaactaaatatggTGCTACCCAGATATACTGACATCAACTAGTTCCAGAACTGAAATTTTACGGTAGTTATTAACCTTTCCAAAGAGGGTGAGCACTTCTGCTTATGCAGATTGTAAACCCTGCTAATAATGCCATATTGTGCGGGACAGCTTTCACCTCCAGTGCCCAGGTCAGTCAGTCATCATTAGTCATCATTAAGTTCACCAGCAGTAGATTCAAGATTGGCACCTTACTGCATCACACAGAGGATGAGCTATTCTGAAGGGAACAGCATGTATCAGCGTGCATGTAGATGCAGTTTCAAAATCACACACTAAATTCAGACACAGTCACTGTCAGCTGCCTCTAAATTAGGCTATTCCGTTTCACTGCCCAATTGCCCAACAGctaagaaaaacagagaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37642 lncRNA upstream 1418 2408969 ~ 2410645 (+) True G25332
TU37641 lncRNA upstream 3126 2407571 ~ 2408937 (+) True G25331
TU37640 lncRNA upstream 6666 2405174 ~ 2405397 (+) True G25330
TU37637 lncRNA upstream 9389 2402445 ~ 2402674 (+) True G25327
TU37619 lncRNA upstream 106204 2303968 ~ 2305859 (+) True G25313
TU37666 lncRNA downstream 26875 2439459 ~ 2470590 (+) True G25346
TU37667 lncRNA downstream 26875 2439459 ~ 2516391 (+) False G25346
XR_006250753.1 lncRNA downstream 26911 2439495 ~ 2454289 (+) True LOC122343307
XR_006250604.1 lncRNA downstream 249530 2662114 ~ 2663045 (+) True LOC122342588
XR_006250564.1 lncRNA downstream 253758 2666342 ~ 2679743 (+) True LOC122342427
XM_043237518.1 mRNA upstream 17622 2388979 ~ 2394441 (+) True ifrd1
XM_043237924.1 mRNA upstream 222315 2178532 ~ 2189748 (+) False LOC122343453
XM_043237923.1 mRNA upstream 222315 2178533 ~ 2189748 (+) True LOC122343453
XM_043237015.1 mRNA upstream 389753 2001089 ~ 2022310 (+) True utp20
XM_043236224.1 mRNA upstream 416527 1994240 ~ 1995536 (+) True lyrm5a
XM_043237879.1 mRNA downstream 93362 2505946 ~ 2602501 (+) True foxp2
XM_043237878.1 mRNA downstream 125435 2538019 ~ 2602501 (+) False foxp2
XM_043237880.1 mRNA downstream 125435 2538019 ~ 2602501 (+) False foxp2
XM_043237770.1 mRNA downstream 209955 2622539 ~ 2641837 (+) True mdfic
XM_043236336.1 mRNA downstream 434690 2847274 ~ 2862389 (+) True elk3
TU37230 other upstream 623967 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 739104 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 1120839 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1746533 654092 ~ 665530 (+) True G24771
TU36683 other upstream 2037981 373527 ~ 374082 (+) True G24632
TU37871 other downstream 702924 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 706945 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1026547 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1028328 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 1034474 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile