RNA id: TU37666


Basic Information

Item Value
RNA id TU37666
length 3527
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G25346
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2439459 ~ 2516391 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttttttgttttgcaaaatgtaaaattttattttcaaaaatgtaagcaACAGATTACACAGTTAACTTTCAGCAATTGCAGTCCTAACTTAAACAGTACTCACATTCGGGACTTCAAAATGAAAGACTCACAAACTTACACACTATCTACctataatatacaaaaagaatacagaataaatattaaaatggccACAAGAGAAAAAAGTAAGTTAATCAAAACAATTAGTAGAGAGCAAATGTTGGGAAAGTAGAAACAAGACTCTGTGCcttaaatacaatgttttttgtttttcctattacattttttacaaattgtgCAAGATTTCAGACTAAGGCTCTGGTCTTGACATGACAGCTGTTCGCCaagcacgcgcacacacgcgcacacacacacacacacacacacactcaagcacaGACGTCCACTCACACATGCTCCCTGTGCTCTGCGCACTCGGTGGGGTGTAGCAAACGTTACAGGGTAAGAAATGGGCTGTCGGTGCACGGGCTGTGCCTGTGATAGTGGTGGTGGATACCGTGTTTCAAATGAACATGCACTTCACCCTGATGCGGAAAGCCTCCCGATATGTCTCAAGGAGACATTTTAGAGGAGCgcgtttgaaatgaaaacatgaagaaaacaCCAGAACCATTAAGGCAAGAACAGCTGGAGTGGAATCTGTAACAAAATTGGCGTGTTCGGGTACATGGATATGCCACACTGAACTTAGCTTAACTGGTTCTCCACTGTCAGTTTAAGTACAAGGTTCTCAAGAGCAACGTTTTAAAATTCAAACAGTAGTTTTTTGACTTAGAAAAATGAGATAAGAAAATAACATTGCCAGACAACAGAGACATACCATATGGATCATAAAACTACAGGAAATAATTTAAGTTGCAATTCCGGAAACCACACGACAGTACCCGCCCCTTAAGACCCGCCCACCAGCCCGCCCCAACCCCAccctaaaaggaaaaaagatatCACTTACATTTAAACCAATTTATCCTCTCGTGAAGGTGTATTCCAACAGAGTTAGTCACCCCACATGTTTTGTTTACTTACAGTGAAAGAGAAGTCTGTTGCAGATTAAAGCATTCGTATTTCAGTTTGGGAAAAACAAGACATCCTTGCAATGCAACGGCGCGAAAAAAGCATCTTCGGGTCTTCTCGTTAGTGCAACTTTTTAGACACAAATTCCAGTGATTCCGTAAGGTGACAGTTTGATTTCTTTACACCCTTTCCAGAGTCTTCCAGATATCCAAAGCAAAGGTCAGTCCCTTCTCGACGTatccgtttttttattttcttttctttccatttttttccatgttttattttttcgatttttttttcttttttctttttttttttttgcgtgttgGGTTTCAAATGGCCTTCCGCATCGGTTGTTTACTAGAACATAAACGCGGGACGTGTCCGTTCATCATCATATTCCATCAGACGGTTCAACTACAGGCCTCGAAAAGGGAGCGAGAGGAAcgggagaagagaggagagagctGTACAACATCCCTGATCGACCAGGGCATCCCAACAAAAACCACATCGGATAAACAAGAAACGCCACCGAACCTTCATATAACACAGTAGGGTTCCCTCGGTAACCTGGATTTTCTGCAGTAGAGGAGCGTGGTGCTGAAGCATCTCCGGAGCTCCCGGTTGGAGAAGATGCAGATGAATGGGTTGACTCCCGCCTGGGCGAAACTCATCCATACGGCGGCCGTCAGGTAGCCTCCCGGGATCACTGGGCCTCGGGCGAACACCCTCCAGTAGCAGGCTACAAGGTAGGGTCCCCACAGGCTCAAGAAGAAGAAGGTAATGATGTAGAACATCCTGCTTATCCTCTTTTCAGTCTTAAACTCGTCCAGCACCAGCAGACGCCTGCGGCCCGCCGCATTGCTGTTCTGCCGGATTCCCAGCAGGGTGGGAGGCGTGGGGCCTCGGCCGAAGCCCGCCAGCCAGTTCGCCGCAGCCTGGCCGCTCGCCCCCGGGCCGTGGAAGGTCCAGTTCTGGCTGACGGCGGGCACGAACTGCACCGGCTTCATCTTTCGGCGGTCGTGGACGAAAAAGATGAGCTTGAGGTAGACAAGCTGGGTGGCCAGGAGGATGAGTGCAAGGAGCAGCATGAAGCCCAACGAGTCATTGGCGCGGAAGGAGCGGTGCTGGAAGGTGCACTGGTCCTCCTCGCGGATGAAGGAGTATGTGCCCACATCCAGCACTGGAGGGAACGCCATGGCTACTGACAGCGTCCACACCATGCATATGACGGCCAGGCATGTCCAGAAGGTCAGCCGCTTGGTGTAAAAGCGGTGGTGGGCGATGGCCAGGTACCGCGTCACGCTAACGCAGAACAGCATGAAGGCAGTGTGGAAACAGGAGAGCACGCCCAAGAAGGCGATCACTTTGCAGGTCAGCGTGCCGTAGGTCCAGGCTGAGCCATTCTTGACGGAGGTGAAGACGAAGGGGAAGCAGATGGCCGAGCGGAGGATGTCCGAAGCGCAGAGGTCCAGCAGGAAGTAGTAGGGTGCTCGATGAAGGCTCTTGTCTTTGACCAGCAGGATGGAGATCAGGAGGTTTCCGACCACGCCAACGCCGATGATGAAACCCAGGGAGGTCAGTTTAAGGAAAGTGGCGAGCGGAGAGACATTCTGCAAGATGTTGTGGTCCCCTGCATGGCTGTAGTTCGCCATAGATGGAGAAGGGATCATAGAGAACGCTTAAAGCTTTAGCCAAGTATCATGATCTGGATGGAGCGTGGAGCGATAGATCCATCTGGTGTGCTTTCAAGCAGGTTCCAGCCTTGTTCGTCTCTGCCTCTCTTCTAAGGCATCCTTTGTTCCTTTGTCTCATCACACCTAAAAGGATCCCTGAAAAACATGATCCACCCATTAGGATTCGCTCACACAAAACAAACTGGGGGGCTTTGCGTTGCATCGCTCATTTCTTTTGTCATTCAGATTGCTTTTCTAATTGCATACGAAATTGCGGCTGCAACGGTATGCCGTCTGAGCCGAGCTCATACAGTTGCTTAATTCAGCACAAGGATTCAGCGTCGGACACCGACATAAATCCTGGGTAAAATAACAGACCCCCACCCCCAACATCTCCCCTTTTTCcaaagcaaattaaataaataacagcaaagACACAGAGAGTGCAGTCGACAAGATGCTCATCACCACGGCTAGACATCCGTCTAGAGGCATATTCATCTGTGCTATGATAGAAAAAGACTTGAAATCTAATGATTGTTATCCGCTACACCCGAAAGGAACATTTGTCGAAATGCAGCAAGAAAAGCTGTTGATCACACCCAAAGATCCTGCAGAATCTGACCGTGTTCATTCCCTCTGTTTATCGTGATACTGTGTAAAATCAGCCATGAATCCTCATATGATTGACTGTATAAAGGAATATGAAGAAATGCATCATGCTATATTTTAGATCTATATAGGTTATTTGCGTCTTTCATACAGACATTATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37644 lncRNA upstream 26875 2412063 ~ 2412584 (+) True G25334
TU37642 lncRNA upstream 28814 2408969 ~ 2410645 (+) True G25332
TU37641 lncRNA upstream 30522 2407571 ~ 2408937 (+) True G25331
TU37640 lncRNA upstream 34062 2405174 ~ 2405397 (+) True G25330
TU37637 lncRNA upstream 36785 2402445 ~ 2402674 (+) True G25327
XR_006250604.1 lncRNA downstream 191524 2662114 ~ 2663045 (+) True LOC122342588
XR_006250564.1 lncRNA downstream 195752 2666342 ~ 2679743 (+) True LOC122342427
XR_006250552.1 lncRNA downstream 215834 2686424 ~ 2719361 (+) True LOC122342395
XR_006250553.1 lncRNA downstream 215834 2686424 ~ 2719361 (+) False LOC122342395
XR_006250772.1 lncRNA downstream 256212 2726802 ~ 2787657 (+) True LOC122343412
XM_043237518.1 mRNA upstream 45018 2388979 ~ 2394441 (+) True ifrd1
XM_043237924.1 mRNA upstream 249711 2178532 ~ 2189748 (+) False LOC122343453
XM_043237923.1 mRNA upstream 249711 2178533 ~ 2189748 (+) True LOC122343453
XM_043237015.1 mRNA upstream 417149 2001089 ~ 2022310 (+) True utp20
XM_043236224.1 mRNA upstream 443923 1994240 ~ 1995536 (+) True lyrm5a
XM_043237879.1 mRNA downstream 35356 2505946 ~ 2602501 (+) True foxp2
XM_043237878.1 mRNA downstream 67429 2538019 ~ 2602501 (+) False foxp2
XM_043237880.1 mRNA downstream 67429 2538019 ~ 2602501 (+) False foxp2
XM_043237770.1 mRNA downstream 151949 2622539 ~ 2641837 (+) True mdfic
XM_043236336.1 mRNA downstream 376684 2847274 ~ 2862389 (+) True elk3
TU37230 other upstream 651363 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 766500 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 1148235 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1773929 654092 ~ 665530 (+) True G24771
TU36683 other upstream 2065377 373527 ~ 374082 (+) True G24632
TU37871 other downstream 644918 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 648939 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 968541 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 970322 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 976468 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile