RNA id: TU37820


Basic Information

Item Value
RNA id TU37820
length 4053
lncRNA type read_through
GC content 0.42
exon number 3
gene id G25455
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2935162 ~ 3030892 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAGCGTTGCTCATGCATCGTCCAGCATAAACTAAAGTTCAAGAATTACCTGCGTATCGCAGTAAACATACATCAAAAATACCCTTTTGAGAGATTTATTCCAAGTCCTGATCATAATACTGTCATACGTCCTTTCTTCGCGTGACACCTAGTGTTTTGacctataaatattttatgcttattatcttttcaaggatttttttttttttttttttttttttttttttttCTTGATTTacttaaatgacttttattaaGTTTACAAATAGGGtaacaaatgctgttttattggaGCGCAAAGCGCAGTTTTATATGAAGCTTGAACATCCTATACTTAGTGCAAAACATACAGTTAAACATTGCCGATGATTCCctacatgtttttgtttggttttcattttaagtaactcttttaacattttgtacAATGTTAAATATCATacggagaaaaacaaaaacaaacactgaatgAAAGTCACCAGAGGAAATCTAGAGACTCAAAAGACAGCAAAACAAGCGGATCAGATAGtagtacaaaacaaaataacttaATGACGGGTCAGTAGCATTAAGTAAACATTGTTCTGTTGTATTTCTTTCCACAGGAGAGCGACTAGTAAGGAGGATTCATTCAATAAGATAGTTTAGAGTgagtttgtgtgcattttttttttcctgtgtaaCTAAAGTCTCAtgcaaaaagaaaggaaaaatacattgtattgttttttttcatcataaacTGAATGTCTAGCGACGCTGAACGGCTCGTTCGTACATCAGCACgctgcaaacatttttttttttcaaagcaaagaaaagttttttttttttttgtttatattttccaAGGTGCTGTATCATTTCCATCAGAGGTCAGAGGCGAATCTCGTTTAACTTTGTACGTCCTGCACTGCAGTTACATTAGCGCCCTCTACAGTCAAACAGGGGGACCTGTTTCTTACAGCGAGAGCAAATTAACACTTGCGTCATATCTGAGACAGGGACATGGCACTCAGAAGGTAGTATTTCATTAGTCTGAACACTGAGCAGGTTGGACCTCTTTGTTAAAGACCTTTTGATGTGTTCACAGTTTGAATGAACCGAGCGACGTAAAGTGGGAAACAAACGAGCTGTCTACAGGTAAAGCGTTGTGTACAAAGCAAGAGATAAAGGTGAAACGATCAGATTTTGAATATAGAGAGCCAGTTGAGAATCTAAACTGTACAGTTGACCTAAAGTGAAGCTCCTGTACCAGACCTTTCACGCAGACGGCACACTAAGCGGTATGTAACGAGTTGAAATCTAAGTCCTTTCAGTAGTTAAGGTGATGAGAGCATCTCCACTACGTTATTGTACCCCAAATAAAATGCTCTAAGGATCTGTACATTTGTTTCTGGTGGACCAGGACTGTTCTCTATTCGTCTGCACAGTCGAATGTGCTAAACCAAAGCATTTACAAGAGTGATCCGACTGACTGCTACACAAAGGTTTTCCAAAAAGAAGCTACTGATCTGCCGCAAAAACCGAAGGCCGTTGTCAGTACGGTGATGTGAGAACTTACATGGGCAGTGAGAGTTAAGAAGAAGCGGATTGAAGAGAAACCAGCCAGAAATAGTCTTCAAAGTGCTGTTTTGGCAGAGAGTGGCGTTCTTGTGTCGGTGAGGGCCGCTAACAGTCTTCCTCCCACCTTTCTGGTCCTTTTCTCGACTTGCTGTCACATCTGTTGCTAAATGAGTCAAACGTGTCTCCCTATGCACACCAGAGAGGATTCGACGCTGGATGGCGTCAAAACCGATTGAGCAGTGCTGGAAAAACATCTAAGCTATTGGTGGTTTTGAGATACTTACAACATACTGTCCCATACGTACTAACTTTCCTCGTCCCGCGTTTCTATCTGAGCCGAACCCTCACCTTCACAAGAAGCGTTCGCACGGTTTAAGAATCCATCTGGAAAACAAAGACACCGCGGTTGTCGGAAAAAGAAGTTCAAATGACTCATCTATGTGCTGATGATAGGCACACTTCCACTTGCATACTAAGGTAGATTGATCAAAGTATCTAAAACTCAACCCTTAAACACTTTGACAGCCTTTGAATGTGATATAACGGCTGGATCGTGTGTTTGCGCACCTTATACACGAAGCTTTTGGCGACTAGGACTGTGCCATCAAATGGATTCAGTCGTAGCCAATTCAAAACGGCATCCAAAACAACACCTCGTTCctgcaatatattaataatcaccTTCTGTGAAGTCCAGCACTCCAACCAGAGACTCTCCGCTGCCGTTTATATTAAACCCCAAAGCAAAAACtagtaacacaaaaataaagcaaggcACTAGAATCTTCAGAAAGCTCACCGGGTTTAGGGAAAGATTCGTTTCTTCAAGTACGTTAATTGAATccatttacattcacatttatctaataatataaagaaagtacaaaggggaaaaaaggatTAAAGTGTCTCCAATAAGATGTGAATAATGAAATAGCTAGCCTTACATCTCATGAACGCTAATATCCAAAACCCTCcaaaatttcatgttttttttttttgtctacttTCTTTTTATCGAATGTTGTCcaacaacatttataataatcacaGTGTTTCAACATCAAAAACTGATGAGTAAATACAGGTCCATACAGAACACGACTTCTTATTTGAATGTCTCGATCAAACCATCTGTAAGAGGCCCCTAATGCTGCCATGATTTGAAAAGGCTGATAATTAGCCATAGATTTAAAGCTTCACGGGCTTCCAAGGCGACCGATCCCGTATCTAAACCCCAAACCAACTGATTTTATCCACCATTTCAAGTCACCTTGTGATGTGGCCCGATGAAAAAACTAGAAGAGGACGGTCAGAGTGTGAATGTGCATGCTGGGATGCATGTAGGAGCTTTGCAGTACAAATCTCAGGGGGCAGCTGAAAGGCCTCTGaacatgtgacaaaaaaaaaaaaaaaaaaagtactgtccCTAACATTCTGCTACACAAGGCCGGCTTGAAGGGCATAGGGAAGAAaaaccaaccaaccaatcaaatgaatgaaatcaaaCCCTTATAAcccaatttaaaaacaaaggagATCTGTACATggattttctcattttatctAATGAAGGCCACTTCCTGTGTTTTAAAATGGGCTTTTTTCTACCATtgtaattattgcattattccATGGCATTGCAGCAGAGGGTTTAGGGCAAGAGGGGAACTGAGTTCTAGTCTCTTCGCTGCTCACCGTCACCCACCCGACCTCCGTTTTTGTTGACATGCTTGATGTATGAATATATCAGGAGGATATACAGATGGATGCCGGTGGCGTTTGTTCCATTTTCGGTCAGCAAATCTCTAATCGAACCCCTTGACAAATGTTTGGGGCTGGGTGGTGAAGGATGCCATCACTACACACcttaacaataaaaatggtcACACCTTCTTTGGCCACGTAACATTGCACACAATTGTCCGccgttttattttcattctctcTAATCCCTTGCGTCGTTGTGCGTCATCCCCGTGGCATTATCTGTGAGCATGCATGCAGATTCTGGCATCTTCTTTCTTAAGCATCCACTCACGTGACAGAATCTCTGCAATGCACTCAAACGCTTGCCCAATCCACCCCCTTCCTTCCCCCAActcaaaagttatttatttaggcCTGGAGCGGCTAGGCCCTGCCCTACGTGGTCTTCAGGTTGGGTCCACCCGGGTGGCTCACTGACTTTTGCAAAGTGCTGATGTGGAAGGTCTGTAAAGGGGTGGGAACCTGGGGATACTGTCCCAGGGGTTGCGAGGTGGCCAGCAAACCGGCCTGGGTGTGTGCGACTGAACCAGCCCACTGGGCGCTGTAAGGTGCAGAGGGGTAGCCATACTGCGGTGTGGGACACAAGGAGCCTTTCCGGGCCCCCAGAGAGGTAGCGGGAGTGTTGGGAATGGGCGGGTGGCCACTCAGAGTTGAAGCGATGCTTGGGCACAGCTGGCCAGGAGCCGAGTACTTACGGCCCATATTGGTAGGAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37817 lncRNA upstream 3303 2931108 ~ 2931859 (+) True G25453
XR_006250771.1 lncRNA upstream 109373 2790078 ~ 2825789 (+) False LOC122343411
XR_006250770.1 lncRNA upstream 109373 2795818 ~ 2825789 (+) True LOC122343411
XR_006250772.1 lncRNA upstream 147505 2726802 ~ 2787657 (+) True LOC122343412
XR_006250552.1 lncRNA upstream 215801 2686424 ~ 2719361 (+) True LOC122342395
TU37903 lncRNA downstream 378109 3409001 ~ 3434462 (+) True G25502
TU37910 lncRNA downstream 389744 3420636 ~ 3429146 (+) True G25504
TU37933 lncRNA downstream 515230 3546122 ~ 3547509 (+) True G25523
TU37946 lncRNA downstream 670536 3701428 ~ 3701754 (+) True G25534
TU37947 lncRNA downstream 670942 3701834 ~ 3702371 (+) True G25535
XM_043237080.1 mRNA upstream 8064 2923221 ~ 2927098 (+) False ucmaa
XM_043237079.1 mRNA upstream 8064 2923223 ~ 2927098 (+) True ucmaa
XM_043237682.1 mRNA upstream 14919 2916161 ~ 2920243 (+) True phyh
XM_043236380.1 mRNA upstream 21683 2912178 ~ 2913479 (+) True LOC122342536
XM_043237665.1 mRNA upstream 26467 2907459 ~ 2908695 (+) True si:ch1073-67j19.1
XM_043236263.1 mRNA downstream 68845 3099737 ~ 3117994 (+) False ninj2
XM_043236262.1 mRNA downstream 68904 3099796 ~ 3117994 (+) False ninj2
XM_043236260.1 mRNA downstream 88623 3119515 ~ 3207783 (+) False erc1b
XM_043236258.1 mRNA downstream 88631 3119523 ~ 3285393 (+) False erc1b
XM_043236247.1 mRNA downstream 88637 3119529 ~ 3306758 (+) True erc1b
TU37230 other upstream 1147066 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 1262203 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 1643938 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 2269632 654092 ~ 665530 (+) True G24771
TU36683 other upstream 2561080 373527 ~ 374082 (+) True G24632
TU37871 other downstream 84616 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 88637 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 408239 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 410020 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 416166 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile