RNA id: TU37830


Basic Information

Item Value
RNA id TU37830
length 582
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G25456
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3017567 ~ 3024764 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAAACATAGCGTTCTACTTTATTACTAACGAACCTCTTGCAAAGAAGCTTGTCTCAAAGCAAGTCCGTGTTTGGAGCAGATTTATTTCACATCGTAGCTTAAATACATAGTGCCTTGTccaacagaaaaagaaatgtgattGTTGTTTCCGATTCCCACCGGTCCACTGTACCAGCCCAAGTGATCGTCAGACGTCGTGTCTTTGTCCCACACCTCCATCTTCAGTTTGTCGCCGGAATCACAGCTTGAGAAGGTGAAGCTCTCTGTCCACTGAGGATTAGAATTATCTTTGATGTAATTTGTATCCTCGAAAGAGCCACCACACCAGATCTTGAGGTACGGATCGGGTTTGTTTCCAGCAGCATCACCGGACAGGTTGTTGGCGTGCAAGTCATACACGAGCACGGCGGCGCTGGAAAAGTCCAGCTGAGACGCCAGCATCAACACGACCAGAGACGCCAACCCGAGATGACCGGACACCGCCATGACTGTCAGGAAACACAAACCATCAGTTATAATGAAGACTTGTTACGCATAAACTGAAATGCAACGAACGTAGAAACGTTTACCGCACTGTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37821 lncRNA upstream 81338 2935162 ~ 2936229 (+) False G25455
TU37817 lncRNA upstream 85708 2931108 ~ 2931859 (+) True G25453
XR_006250771.1 lncRNA upstream 191778 2790078 ~ 2825789 (+) False LOC122343411
XR_006250770.1 lncRNA upstream 191778 2795818 ~ 2825789 (+) True LOC122343411
XR_006250772.1 lncRNA upstream 229910 2726802 ~ 2787657 (+) True LOC122343412
TU37903 lncRNA downstream 384237 3409001 ~ 3434462 (+) True G25502
TU37910 lncRNA downstream 395872 3420636 ~ 3429146 (+) True G25504
TU37933 lncRNA downstream 521358 3546122 ~ 3547509 (+) True G25523
TU37946 lncRNA downstream 676664 3701428 ~ 3701754 (+) True G25534
TU37947 lncRNA downstream 677070 3701834 ~ 3702371 (+) True G25535
XM_043237123.1 mRNA upstream 5463 3006873 ~ 3012104 (+) True optn
XM_043236798.1 mRNA upstream 23068 2943924 ~ 2994499 (+) True camk1da
XM_043237075.1 mRNA upstream 75970 2938072 ~ 2941597 (+) True cdc123
XM_043237080.1 mRNA upstream 90469 2923221 ~ 2927098 (+) False ucmaa
XM_043236263.1 mRNA downstream 74973 3099737 ~ 3117994 (+) False ninj2
XM_043236262.1 mRNA downstream 75032 3099796 ~ 3117994 (+) False ninj2
XM_043236260.1 mRNA downstream 94751 3119515 ~ 3207783 (+) False erc1b
XM_043236258.1 mRNA downstream 94759 3119523 ~ 3285393 (+) False erc1b
XM_043236247.1 mRNA downstream 94765 3119529 ~ 3306758 (+) True erc1b
TU37230 other upstream 1229471 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 1344608 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 1726343 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 2352037 654092 ~ 665530 (+) True G24771
TU36683 other upstream 2643485 373527 ~ 374082 (+) True G24632
TU37871 other downstream 90744 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 94765 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 414367 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 416148 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 422294 3447058 ~ 3447574 (+) True LOC122343393