RNA id: TU37871


Basic Information

Item Value
RNA id TU37871
length 2421
RNA type TUCP
GC content 0.41
exon number 2
gene id ninj2
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3099737 ~ 3117994 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGAAACCCATCGTgcgtgtgtttttgtcttttctgtgGTAAACGAGGTGTTTTCGGAGCAGCACAGGGGGCTTGAATGTTTACATGGACCCTCCTCCTGTGTATGCGCACGTGTTGTGGGATGTGGCCTGCCCAGAAAAGAGGAGCAAAAAGAAAACGGAGtaacaacatttattcatttgagcGAACCCTCCTCGCCCGTTCTCATTCGCTATTGGACGTGAGAGCAGCCAATGAGTGGGTGGGGAGGTGGACTTCCTGTGGGCCAGCGACACGGGCCCCACATGTAAAATATTCCTGACCTCTCCCatggtgtttattttaaaaagaaaaaaggaaaacgcTCCCCATCATTAAGGAAAACAGTGAGCCTGTGCGTGTGGTATTTGGGCGCTCGCCCGGTCTTAGTGTTACTGCGCCGTGATTGGTGGAGAGGATTCGGTTCTTTATGCAAAACAGGCTCTTCTTATGTCACATCACATGTATGAAACATGTATGTTTGTAAGGGGGCGGGACGCTCTACAGAACACTTTGTTCTGATGCAGATAAGACGTCTGCTCGTGTGGGAGAGGGTTCGAACACATTCTTGGAGGGTCATGCGTTTGTAAACCTACATGTCTCTAACAGGTCCTGTAGACGGTGATGAGGGCACATTATGGGAACCGAGATCAAAAAGAAGACTCACGAAACACACGAAGTGAAGCAAAAGTGTTGGACCGATTTAGCAGAAAGGTTTCAAGGGCTCTGGATAGAAAAGAAATATGATATCAGTGCATTGGGGGGAACTAAAAATCgacatgtttatgtattttgctCCACGTAGGCTACATATTAGGAAGAGATTTCAGGAGATGTATTGGAAAGTATGTATGTTTAGTTTTTCataagaaaattattatatacagtatatatatatatatatatatatatatatatatAAAGATGATTATGAAAGGATATCTAGCGCCCCCAGATGGTTACTGTAAAAGTAAGTTACAGATTGAAAAAATGAATAGTGAAATGCTGCCATCTATTGATAGATATGGACAACTTAGTCcaaccaaatgtccccacaaggatagtaaaCACTGACATTTGTGACTGAAAATTATTAAAGCATGCATAAAAGGTGCAGGGcgattaaaaatattgttaggtcagtataaaaacaatagaagccTATCAAAGTCTTCACATATATAtcaaaacaaacgtgtgtgtgtgtgtgttttaatgaagtATTTGGTTGGAGTGTTTGTCCtgagcagaagaaaaagaagtattaattataaagaaatgaatatatTCAGTACTTTTGACATTCAAACGGGttcatttagcttttttccACTTGCACCGAGAACCTCTCTCTGGTTTTGAAGGATCTTATCTCACAGAGTACAGATGTTGCTGGAAACCGCTGATATTGCTTCTAAAAAACGAGAGCAGATGGCCTCTTGTTTTCCTCCACTGAAGATAGCACACCGTCGGTGGAATAAGCATGCATGAatctgtaaatataattttatacacaTAAGCTACACATCCGTATACCATAAAAGGTGCAATTAATTGTTAGTTACACAGTAGAAATGTACTTCATTTGAAATGCTTTGTCTCTTTCAGCCCGCAGAGCCTCTCAACATGAATCATTACGCCACTAAGAAGAGCGTGGCGGAGAGCATGCTGGACGTGGCGCTGCTGATGGCGAACGCCTCTCAGCTGAAAGCCGTCCTGGAGCAGGGCCCCGAGTTCAAGTACCACCTCACCGTCATCGTCCTCATCGCCGCGTCTCTCTTCTTCCAAGTGCTCGCGGGGGCCCTCTTTGTCCACATGGGTGAGAGCCACATCCATCATGCATTACGCACAAAACCTGTATGGATGCTTTACGCTCATTTCTGCCCTTCTCAGCGCGCAAAAACATCAACGATGTGGCCAATCAGAGGAAGCTGGACATGATAAACAACGTGGCCACTGTGCTGGTGTTCCTCACCGTCATCATCAACATCTTCATCACCGCTTTTGGAGTGCAGAAGACAGGTCTCTATCCTAAGCAGTAAACAGACAGGtgatacagaaaataaaaagcatctCTGAATAAGCATGCCACAATATCATAAACTCTATCTTTCATGTTGTTTGGTTTTAGGGTCCCAATAATGGCCATCCTTCAATCACGAAAAGACTTCCTTCTGGCTTCCATATTTGTTATACTGTTGAAGACACATATATTTAacgcttttttaaattatttatttctacaaaGGGCATTATATTAAAGGGTCTACAACATTCATAATGCACTGTCTAGTGATTTATATTACCTAGAGGCAAAACTATAATCAAATAACACTAATTCATCATGTAATATGTATTCTACACTTCATGCTGTACCAGATAATAAAcgtttattataaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37820 lncRNA upstream 84616 2935162 ~ 3030892 (+) True G25455
TU37823 lncRNA upstream 90744 3017567 ~ 3024764 (+) False G25456
TU37828 lncRNA upstream 90744 3017567 ~ 3024764 (+) False G25456
TU37830 lncRNA upstream 90744 3017567 ~ 3024764 (+) False G25456
TU37824 lncRNA upstream 90744 3020883 ~ 3024764 (+) True G25456
TU37903 lncRNA downstream 291013 3409001 ~ 3434462 (+) True G25502
TU37910 lncRNA downstream 302648 3420636 ~ 3429146 (+) True G25504
TU37933 lncRNA downstream 428134 3546122 ~ 3547509 (+) True G25523
TU37946 lncRNA downstream 583440 3701428 ~ 3701754 (+) True G25534
TU37947 lncRNA downstream 583846 3701834 ~ 3702371 (+) True G25535
XM_043237123.1 mRNA upstream 103404 3006873 ~ 3012104 (+) True optn
XM_043236798.1 mRNA upstream 121009 2943924 ~ 2994499 (+) True camk1da
XM_043237075.1 mRNA upstream 173911 2938072 ~ 2941597 (+) True cdc123
XM_043237080.1 mRNA upstream 188410 2923221 ~ 2927098 (+) False ucmaa
XM_043237079.1 mRNA upstream 188410 2923223 ~ 2927098 (+) True ucmaa
XM_043236260.1 mRNA downstream 1527 3119515 ~ 3207783 (+) False erc1b
XM_043236258.1 mRNA downstream 1535 3119523 ~ 3285393 (+) False erc1b
XM_043236247.1 mRNA downstream 1541 3119529 ~ 3306758 (+) True erc1b
XM_043236248.1 mRNA downstream 1541 3119529 ~ 3306758 (+) False erc1b
XM_043236246.1 mRNA downstream 1541 3119529 ~ 3306758 (+) False erc1b
TU37230 other upstream 1327412 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 1442549 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 1824284 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 2449978 654092 ~ 665530 (+) True G24771
TU36683 other upstream 2741426 373527 ~ 374082 (+) True G24632
XR_006250571.1 other downstream 1541 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 321143 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 322924 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 329070 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_301 other downstream 352378 3470366 ~ 3471135 (+) True LOC122343352

Expression Profile