RNA id: TU37922


Basic Information

Item Value
RNA id TU37922
length 398
RNA type TUCP
GC content 0.42
exon number 2
gene id G25514
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3481629 ~ 3502094 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtttaacacttcatgactgagagcagaacacaacacaatcttcatcatcacacaagactcaactactacaatgaacaacatcctcatcctcatctggactcTGACTCTCTGTATTCAGGAGAGCTGGGGACAAATGACAGTGACTCAGAATCcagaaataaaatccatcaaacAAGGAGAAACTGTTACAATCAGCTGTAAAACCAGTCAAACACTTACTAGTTGTGGTAGCTGTTTGTCTTGGTATcagcagaaacctggagaagctcctaaactcctcatttattacataaacagcctccagtcaggaactccatctagattcagtggaagtggatcagggactgatttctctctgaccatcagaggagtccagactgaagatacaggagattatt

Function

GO:

id name namespace
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37903 lncRNA upstream 47167 3409001 ~ 3434462 (+) True G25502
TU37910 lncRNA upstream 52483 3420636 ~ 3429146 (+) True G25504
TU37824 lncRNA upstream 456865 3020883 ~ 3024764 (+) True G25456
TU37933 lncRNA downstream 44028 3546122 ~ 3547509 (+) True G25523
TU37946 lncRNA downstream 199334 3701428 ~ 3701754 (+) True G25534
TU37947 lncRNA downstream 199740 3701834 ~ 3702371 (+) True G25535
TU37948 lncRNA downstream 204765 3706859 ~ 3707064 (+) True G25536
TU37949 lncRNA downstream 206443 3708537 ~ 3708852 (+) True G25537
XM_043236827.1 mRNA upstream 100457 3311653 ~ 3381172 (+) True LOC122342760
XM_043236828.1 mRNA upstream 100457 3360189 ~ 3381172 (+) False LOC122342760
XM_043236829.1 mRNA upstream 100457 3366615 ~ 3381172 (+) False LOC122342760
XM_043236826.1 mRNA upstream 100457 3371526 ~ 3381172 (+) False LOC122342760
XM_043236256.1 mRNA upstream 174871 3119535 ~ 3306758 (+) False erc1b
XM_043236953.1 mRNA downstream 77534 3579628 ~ 3601006 (+) True LOC122342820
XM_043237790.1 mRNA downstream 158523 3660617 ~ 3675293 (+) True LOC122343370
XM_043236806.1 mRNA downstream 176151 3678245 ~ 3701214 (+) True adipor2
XM_043237555.1 mRNA downstream 258490 3760584 ~ 3769843 (+) True sult4a1
XM_043237747.1 mRNA downstream 387343 3889437 ~ 3895875 (+) True samm50l
unassigned_transcript_301 other upstream 10494 3470366 ~ 3471135 (+) True LOC122343352
unassigned_transcript_300 other upstream 34055 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_299 other upstream 40129 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_298 other upstream 41975 3439131 ~ 3439654 (+) True LOC122342808
XR_006250571.1 other upstream 174871 3119529 ~ 3306758 (+) False erc1b
TU37969 other downstream 235408 3737502 ~ 3738594 (+) True G25551
TU38369 other downstream 727535 4229629 ~ 4231092 (+) True G25837
TU38370 other downstream 730814 4232908 ~ 4235244 (+) True G25838
TU38543 other downstream 1048069 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 1048069 4550163 ~ 4628899 (+) True G25958

Expression Profile