RNA id: TCONS_00011115


Basic Information

Item Value
RNA id TCONS_00011115
length 1353
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_005273
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16964656 ~ 16966808 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTTATTAGATATTTACAAAATCGTTTATTAACAAATGAAGTTAGTTTTCAAATGATAGAACtcaaaatcaatataaaaatcTCTCAGTGACATGGATTTCAGACCTGTTCATTCTTTAAGTGAATCAGGGGTTCATATTCGATCAAATATTACACCATAAAGATTACATTTAAGATCTGTGTAGTGATGCTGTTTGACACTGAACACTGAATCAACTGAATTTAAAAGATTTCCAGTAAAGTTACACTGACTCAGATCACATATCAGACACATCTGTCAGGAGATTAAGGATATTTGCATGTAACATTTAACATCTGGTTATCTAAAATTATGCAATTTTGAAATCTAGTTATCTAAAATTATGCAATTTGTAAAGACATGATTTAGCTCTGGAAAAAGTTTATAATTCAGCTGTAATGGCCATTTCGAATTTAGAACATGCTGCCTGAAAACTGGGAATACAGTTTGGAACAGTCAAAATACATttatggaaagaaagaaagaaagaaagaaaggttaCGTACAGTTGAACATATAGGGCAAAGAATGAACATGCTTTAACATTTTGCTGGCTTACAAGAACAAAACCTGCTAAAAAAAGCAATTCGACTACATTAGATGAAGTAGTCCATTCAAGTGAAACGATGACACCCCTGTTCAGAAATCATCTACATGCTTGCTTTGCATTAGCTCAGTTCAAATACAATGTACCGACATGCATTCAGTCTGATGTGGCATATAGGAAAAagccaaacaacaaaaaaagaacatcTCTGAAATATACTGTTAAGGACTGAAGTATACACTGACATCTGGATTCAGCATTAGCAACAATACAGAGGATACAGAGATAAAGCCTTGTCTCCATCAGTGAAAGGCACCCCGTAACCATTGGAAGTTACTTTTGTGGCTCAAAGAGATGTTGGggacggggggggggggggggggggggatgccATAGTGCATAATCCAGACATCCAAATACAAAATGGCACCCCACTGCATAAGGCAATTCTAAGGGCTGAGCAGAGAAAGTAAAGCATGAATGGGCAAGAAAAAGGCAAAGATCTGGAGACTAATGTGATGCAAGAGATGTTACTGCAGCTAGAAGACACTTTAATGTCAGCACAGGTCTGATGTTGAGCTACAGTAACAACTACTACCGCAGGTTCAGTACAAACAAATAAGTGAGTATTATTCAGATCCTCTAATAGAAATTGCATCTTATTCCTCATCAATTTCTCTTAGTTTTGGTCTTTCCTGCATTCAAAatgatcaacaacaacaaaatctgcAAACTTAAACTATTAGCTTATTTTTTATAGAAGTGAATGTCTCTTGAGGgggaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011113 lncRNA downstream 13458 16938808 ~ 16951646 (-) True XLOC_005271
TCONS_00010804 lncRNA downstream 21856 16942204 ~ 16943248 (-) True XLOC_005272
TCONS_00011112 lncRNA downstream 218557 16743052 ~ 16746547 (-) False XLOC_005265
TCONS_00010110 lncRNA downstream 512923 16446820 ~ 16452181 (-) True XLOC_005254
TCONS_00010109 lncRNA downstream 517712 16446239 ~ 16447392 (-) False XLOC_005254
TCONS_00010158 lncRNA upstream 730397 17697132 ~ 17698312 (-) True XLOC_005287
TCONS_00011116 lncRNA upstream 755066 17721801 ~ 17727540 (-) True XLOC_005291
TCONS_00011117 lncRNA upstream 1257799 18224534 ~ 18227730 (-) True XLOC_005295
TCONS_00010171 lncRNA upstream 1443876 18410611 ~ 18411624 (-) False XLOC_005297
TCONS_00011118 lncRNA upstream 1443876 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00010133 mRNA downstream 23785 16938807 ~ 16941319 (-) False XLOC_005271
TCONS_00010132 mRNA downstream 41942 16919411 ~ 16923162 (-) True XLOC_005270
TCONS_00010130 mRNA downstream 66964 16895644 ~ 16898140 (-) True XLOC_005268
TCONS_00010129 mRNA downstream 87968 16874645 ~ 16877136 (-) True XLOC_005267
TCONS_00010128 mRNA downstream 200353 16758972 ~ 16764751 (-) True XLOC_005266
TCONS_00010134 mRNA upstream 22385 16989120 ~ 16990896 (-) True XLOC_005274
TCONS_00010136 mRNA upstream 53170 17019905 ~ 17024079 (-) True XLOC_005276
TCONS_00010137 mRNA upstream 58991 17025726 ~ 17028255 (-) True XLOC_005277
TCONS_00010138 mRNA upstream 66759 17033494 ~ 17035339 (-) True XLOC_005278
TCONS_00010139 mRNA upstream 150670 17117405 ~ 17147473 (-) False XLOC_005279
TCONS_00010131 other downstream 63345 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010127 other downstream 218557 16743282 ~ 16746547 (-) True XLOC_005265
TCONS_00010126 other downstream 218788 16743052 ~ 16746316 (-) False XLOC_005265
TCONS_00010121 other downstream 310309 16654681 ~ 16654795 (-) True XLOC_005263
TCONS_00010117 other downstream 366247 16598743 ~ 16598857 (-) True XLOC_005260
TCONS_00010135 other upstream 30471 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010161 other upstream 740057 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010183 other upstream 1771678 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010211 other upstream 3222434 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010220 other upstream 3608905 20575640 ~ 20584439 (-) False XLOC_005327

Expression Profile

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