RNA id: TU37949


Basic Information

Item Value
RNA id TU37949
length 316
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G25537
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3708537 ~ 3708852 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgtgttagCTGCAGATCGAATCTAATAAACATGGTTGCTCCCTCCTGTGGTGATTTTTTGAAGTACATCACTGCAATAAATGAACTTACAGGTTATGCCCCCTTGTGGTCATTTTGGTGAATTGCAAGACTGACTGCACATCTGAACATCACTAACCTTCGTCACTTATCaacataaatataacatttcaaatgcatttttgattaaattataaTGAGATTATAATTACTGACAGAAGTCATACCACGGTGCacattttcagataaacaacTATGAAATTATCACTTAACAGAGCGGCAAGTGACACCACAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37948 lncRNA upstream 1473 3706859 ~ 3707064 (+) True G25536
TU37947 lncRNA upstream 6166 3701834 ~ 3702371 (+) True G25535
TU37946 lncRNA upstream 6783 3701428 ~ 3701754 (+) True G25534
TU37933 lncRNA upstream 161028 3546122 ~ 3547509 (+) True G25523
TU37903 lncRNA upstream 274075 3409001 ~ 3434462 (+) True G25502
XR_006250756.1 lncRNA downstream 98087 3806939 ~ 3807898 (+) True LOC122343347
TU37989 lncRNA downstream 98197 3807049 ~ 3807562 (+) False LOC122343347
XR_006250755.1 lncRNA downstream 279831 3988683 ~ 4007148 (+) True LOC122343346
TU38355 lncRNA downstream 420071 4128923 ~ 4129250 (+) True G25823
TU38356 lncRNA downstream 420487 4129339 ~ 4129628 (+) True G25824
XM_043236806.1 mRNA upstream 7323 3678245 ~ 3701214 (+) True adipor2
XM_043237790.1 mRNA upstream 33244 3660617 ~ 3675293 (+) True LOC122343370
XM_043236953.1 mRNA upstream 107531 3579628 ~ 3601006 (+) True LOC122342820
XM_043236829.1 mRNA upstream 327365 3366615 ~ 3381172 (+) False LOC122342760
XM_043237555.1 mRNA downstream 51732 3760584 ~ 3769843 (+) True sult4a1
XM_043237747.1 mRNA downstream 180585 3889437 ~ 3895875 (+) True samm50l
XM_043237733.1 mRNA downstream 188225 3897077 ~ 3905931 (+) True aldh1l2
XM_043237744.1 mRNA downstream 200291 3909143 ~ 3959260 (+) False slc41a2b
XM_043237743.1 mRNA downstream 200291 3909143 ~ 3926881 (+) True slc41a2b
TU37922 other upstream 206443 3481629 ~ 3502094 (+) True G25514
unassigned_transcript_301 other upstream 237402 3470366 ~ 3471135 (+) True LOC122343352
unassigned_transcript_300 other upstream 260963 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_299 other upstream 267037 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_298 other upstream 268883 3439131 ~ 3439654 (+) True LOC122342808
TU37969 other downstream 28650 3737502 ~ 3738594 (+) True G25551
TU38369 other downstream 520777 4229629 ~ 4231092 (+) True G25837
TU38370 other downstream 524056 4232908 ~ 4235244 (+) True G25838
TU38543 other downstream 841311 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 841311 4550163 ~ 4628899 (+) True G25958

Expression Profile