RNA id: XM_043236952.1


Basic Information

Item Value
RNA id XM_043236952.1
length 1593
RNA type mRNA
GC content 0.57
exon number 13
gene id LOC122342819
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3534662 ~ 3577123 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGTGATGATGGTAGAATCAGCAACTGAGACCATTCGAACCACACCCTCCAATCAAAATGGAGTCAGCAGTCtaagcagccaatcagacgGCGGAGGGAGAGAGGGCGGGTCCAACGGTGACGCCAATGGGGAGATCAGCCCGGTGGATTTACTGCACCTTCAAcagcagcagGCCCTCCAGGCAGCACGCCAGTTCATCCTCCAGCAGGCCACAGGACTCAACTCCCCCAGCAGCAACGAGGTCAAACAGAGCCCTGTGCAGGTGCCTGTATCCATGGCAATGATGACCCCACAGATGATAACTCCTCAGCAGATGCAGCAGATCCTCTCTCCACCTCAGCTCCAAGCTTTACTCCAACAGCAACAAGCCCTTATGCTGCAACAGCTGCAGGAGTACTACAAGAAGCAACAGGAGCAGTTGCACCTTCAGCTCCTTACCCAGCAACAGCAAGCAGGGAAGCAGGCCAAAGAGCAGCAGCAGTTGGGGAATAAACAGCTGGCTTTCCAGCAGCAGCTGATCCAGATGCAACAACTACAGCAGCAACACATTCTGAATCTACAAAGACAGGGCCTGGTGAACCTACAGCCGGGCCAAGGAGCAGTACCCATTCAGAGCCTGCAGCAAGCTTATGCAAGAGGCTCGACTGGCGGTAAACAGAGCTCGGAGGGGATGGGGGGGcaacagcagcagcagcagcagttggCAGCACAGCAGCTGGTCTTTCAGCAGCAGCTCTTGCAAATGCAGcaactgcagcagcagcagcacctGCTCAACATGCAGAGGCAGGGCCTCCTCTCTCTGCCCCCCGGCCCAGGACAGCCCACCCTCCCCGGACAGACTCTGCCGCCAGCTGGTCTGAGCCCCGCCGAACTCCAGCAACTTTGGAAAGACGTCACTAGTAGCCACGCCATGGAGGATAATGGGCTAAAACACAGCGGCCTGGACCTGAGCACCACCAACAACTCGTCCACTACCTCCACCAGCAACCCCAAAGCTTCGCCGCCCATCACCCATCACGGCATCTCCAACGGCCAGTCCCCGGCCCTCAACAACCGGAGAGAGAGTTCGCTGCATGAAGAGACCGGAGCATCACACTCCCTCTATGGTCATGGAGTGTGCAAGTGGCCAGGATGTGAAAGTATTTGTGATGACTTTGGGCAGTTTTTGAAGCACCTTAACAATGAACACGCTCTGGACGACAGGAGTACTGCCCAGTGCCGAGTACAGATGCAAGTGGTACAACAGCTGGAGATACAGCTTTCTAAAGAACGTGAGCGTCTTCAGGCGATGATGGCACACTTGCACATGAGGCCCTCAGAGCCCAAACCATCACCAAAACCGCTGAATCTCGTCTCCAGCGTCACCATGTCAAAGAACCTCCCGTCTGTCTCACCCCCCAACTTACCTCAGACGCCCACCACGCCCACCGCTCCAGTCACGCCCCTTTCCCAGATGCCCCAGGTGCCCAACGTTCTCAGCCCCGCCAACGTCCCCAGCATGGGCGCCATGCGCAGACGCCACACCGACAAATACTCCATGCCCTTGTCTTCAGGTTTGcggatTGTTGGAGCAGCGGGGAAGACATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250584.1 lncRNA downstream 89771 3442422 ~ 3444891 (-) False LOC122342503
XR_006250583.1 lncRNA downstream 89978 3442422 ~ 3444684 (-) True LOC122342503
XR_006250642.1 lncRNA downstream 116745 3416587 ~ 3417917 (-) True LOC122342757
XR_006250643.1 lncRNA downstream 131160 3402824 ~ 3403502 (-) True LOC122342758
XR_006250572.1 lncRNA downstream 415112 3117479 ~ 3119550 (-) True LOC122342458
TU38181 lncRNA upstream 69940 3647063 ~ 3701306 (-) False G25706
TU38182 lncRNA upstream 114507 3691630 ~ 3701306 (-) False G25706
TU38180 lncRNA upstream 122259 3699382 ~ 3701306 (-) True G25706
TU38209 lncRNA upstream 130466 3707589 ~ 3707894 (-) True G25731
TU38211 lncRNA upstream 132901 3710024 ~ 3741805 (-) True G25732
XM_043236951.1 mRNA downstream 1913 3531214 ~ 3532749 (-) True LOC122342818
XM_043236171.1 mRNA downstream 3521 3528035 ~ 3531141 (-) False LOC122342399
XM_043236170.1 mRNA downstream 3521 3528035 ~ 3531141 (-) True LOC122342399
XM_043236172.1 mRNA downstream 8349 3521694 ~ 3526313 (-) True LOC122342400
XM_043236169.1 mRNA downstream 13734 3518689 ~ 3520928 (-) True LOC122342398
XM_043236954.1 mRNA upstream 23882 3601005 ~ 3601991 (-) True LOC122342822
XM_043236955.1 mRNA upstream 25233 3602356 ~ 3618367 (-) True LOC122342823
XM_043237851.1 mRNA upstream 135492 3712615 ~ 3721125 (-) True LOC122343407
XM_043237959.1 mRNA upstream 148053 3725176 ~ 3751393 (-) True ttll12
XM_043237554.1 mRNA upstream 175244 3752367 ~ 3759739 (-) True pnpla3
TU38086 other downstream 513205 3021062 ~ 3021457 (-) False LOC122342805
XR_006250644.1 other downstream 1158946 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other downstream 1158946 2304346 ~ 2375716 (-) False dock4b
XR_006250653.1 other downstream 1446083 2042953 ~ 2088579 (-) True cald1a
TU37444 other downstream 1632095 1901843 ~ 1902567 (-) False rsph9
TU38193 other upstream 23877 3601000 ~ 3601974 (-) False LOC122342822
TU38194 other upstream 25235 3602358 ~ 3604270 (-) False LOC122342823
TU38442 other upstream 687803 4264926 ~ 4267495 (-) True G25880
XR_006250792.1 other upstream 1154101 4731224 ~ 4757827 (-) False LOC122343492
unassigned_transcript_302 other upstream 1187730 4764853 ~ 4764940 (-) True trnay-gua

Expression Profile