RNA id: XM_043237718.1


Basic Information

Item Value
RNA id XM_043237718.1
length 5484
RNA type mRNA
GC content 0.53
exon number 24
gene id shank3b
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4133977 ~ 4161828 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCATTTGCTTTATGCAAAATACCGTacatttctttagatttttgggACCAGAGTTTTGAGCCATTCACCTGTGTGTGAATTTTTCCATTCAATCCAGTGTCACTCGGTATCAGACTCGCAGTTGCGTgcatattacataattatatgtCGCTACCCTGACCTCTCGTAAGGATCGTATTGTTGTGACCGTCTTTCCATACACACACCGAACAAAGGCGCCCACGCAATCGTGCTGATGTTTACATCTGGCGCGTTGCCATGGCGATCACGGAACCTTTCATCCCCTGCTTCTGATGCTCCGGGATTTTGCTGACAAactttttatgtcataaaaCAGAACCAATCAGCCACGAGACCATCGGCGGGGctcgttctctctcttctcctcttctctcctctctctccccaCCCCCCAGGCTTTCTCATTCACAATCCCCCTTTTTTACCATCCAGTTCTGCTGTTCTCCGGTAATAGCTgttgagaagagagagagactgtgagTGAGATTCAAGCCTTGCCCACGCAAAGAAGTGGGAGACTGAACCTCTCCctatgctctctctctctttctctctctctctcacacacacacacacacacagtcagtgtATCATGCTTGCACTGTGTGGGCTGAGCTGAGCATTCCTGTCATACAGTAACAGTCTCTCTGCCTccgcactctctctctctctctctctctctctctctctctttccctctctctccctctatttctctctttccctttccCTCTATCTCTCCTCTTTCCtccctctcttctctttctctcacacatacgttccaaatacacacattaacacacttATACACTTTCACAGAACAGAGAAGGACCCTCGTAGAGGAAGTCGAGATGGTGTGGAATGTGTGCCCTGGTTTTATTAGGGTTGTGAGGCCGGCGTGTTGAGcagaacgcacacacactcacacacacacacactctcccggAGCATGCCTATCAGTCCACCTGCCGACGGCAAACATGAGGCTCTCGACCGGCCGCGGCAACAACACACCCCTACCAACGGTAATCACGGAGATGACAGCATTCGGGTCTCTCCTGGGACTAAATCTACCTCCGAACCTATGGAGGATCTCCACGGAAATGCAGTTGTCATCCGCATCGGAATCCCTGATCTGCAGCAAACGAAATGCCTGCGATTGGACCTTGAGGCTCCAGTGTGGGTTTGTAAGCAGCGAGTTCTGGTCACTCTGACACAAAGCCTGACCGATGTGCTTAACTATGGCCTCTACCTCCCTGCCTTTAACGGGCGCGCCGGAAAGTTCCTTGATGAGGAGAGATTGCTCAGGGAGTATCCATTCCCTACGGTCACACCTGTACCGTACCTAGAGTTCCGTTACAAGAGGCGTGTTTACACTCAGAGCCATGTAGATGACAAGCAACTGGCCAAACTACACACCAAGGCCAATCTAAAGAAGTTTATGGAGTATGTTCAACAACGGTGTGTGGACAAGGTCTGCAGGTTTCTAGAGAAAGGGCTGGACCCCAACTTTCATGATGCTGACAGTGGGGAATCTCCTCTCACTCTCGTGGCCCAGCTGGACACTTGTGCCGATCTGATTAAGGTGTTGAGGAGCGGAGGAGCCCATCTGGACTTCAGAACCAGAGACGGCCTGACGGCGCTGCACAAAGCGGTCCAAACGCACAACCATGTAGCATTGACTACATTGTTGGATCTGGGGGCGTCTCCGGACTATAAGGACAGTCGTGGGCTCACCCCCCTCTATCACAGTGCCATGGTTGGGGGAGATCCGTACTGCTGCGAGCTGCTGTTGTACGATCATGCCCAGCTGGGCTACAGCGATGAGAACGGCTGGCAGGAGATCCATCAGGCTTGTCGTCATGGAAACGTGCAGCACCTTGAGCACCTGTTATTCTATGGAGCGGAGATGAGCGCTCAGAATGCCTCAGGAAACACAGCACTACACCTGTGTGCCCTCTACAACCAGGAAGGCTGTGCTAGAGTTCTCCTGTTTCGAGGAGCAAATAAAGAAATCAAGAACTACAACAACCAAACAGCATTTCAGGTTGCTATCATCGCAGGGAACTTTGACCTGGCTGAAATCATCAAGATTCATAAAACCTCAGATGTTGTGCCTTTCAGGGAGACCCCTTCTTATTCGTCTCGGCGCCGCGCTGTCTGCGTATCTCCACGTCGCTCTCTAATGCGATCGGCCAGTGATAATGCTCTAGATGAGAGTCTACCAGCTCCCTCTCCGGCCCCGTCCCTCCGCAGCCTGCCCCCGCTGGAGCCCGACGATACCGCCCCGTCCCAGCGCAGCCCCCAGAcggctcacactcacacacgcagcCTCAGGAGACACACACGCTCTGGAGGACACCTCAGCCCTGGCAGTCCTGTACAGCGAGAGCCGAGTCCTCCTGCCGTGTCTCGAGGGCCCAAGCGACGGCTGTACAGTGCGGTGCCCGGCCGAACATTCATCGCTGTCAGCTCCCACACTCCACAGGGCGAGGGTGAGATCACACTCAACCGAGGAGagagggtcaaagTGCTAAGCATAGGTGAAGGTGGATTCTGGGAAGGCTCAGTTAAAGGACGAACTGGCTGGTTTCCTGCTCACTGCGTAGAGGAAGTCCAGATGAGACAATACGACCCACGACTTGAGACAAGAGAGGATCGCACCAAGAGGCTTTTCAGGCACTACACTGTTGGCTCCTACGACAACTATACCTCTTACAGTGATTATGTTATAGAAGAAAAAAGTGCAACGTTGCAGAAGAGAGATAGCGAAGGATTCGGCTTTGTGCTTCGGGGAGCTAAAGCTGAGACGCCAATAGAAGAGTTCACACCTACTCCTGCTTTTCCTGCCCTGCAATACCTGGAGTCTGTGGACCTGGAAGGGGTGGCGTGGAGGGCAGGGTTAAGGACTGGAGATTTCCTTATAGAGGTAAATGGGGTGAGCGTAGTAAAGGTGGGACATAGGCAGGTGGTATCACTGATTCGGCAAGGTGGAAGTCGGCTAGTAATGAAGGTGGTGTCTGTCACGCGTAAACCTGACACTGGAGACGTTGTCCGCAAGAAAGCCCCACCACCTCCCAAGAGAGACCCAAGCACCAGCCTGACCCTGCGCTCAAAAAGCATGACTGCAGAACTGGAGGAGCTGGCGTCAAGGAGAAGGAGGGGAGAGAAGTTGGATGAGATGTTGAGTTCGCCCAAAGAACCGGTTGTAGTGATGAGGCAGCGTCCAGGGGATTCAGACTCCAGAGCAGCCACTGTGAAACAGAGACCAACAAGTCGCCGCATCACACAGGCTGAGATCAATtCTCTGTTAGAGAGGCAAGGTTTGCCAATAAGTTCCCTGGCTGTGGACAAAAGTCACATGCAGCTGCCTCGGGGAATGTCAAGAACCAAGTCATTTGgtGCACCTGAAGATGAAAGAATCTCAGCCCTGATTGGAGAGCATCGCTTTCCGAGAAGCTCTTCGATGACTGACAGCTTTAGACAAGATAGTATTCCACCCCCTCCACAGACAgctcctccaccacctccaaCTCCCTACTTCGTAGATTCAGGGCCACCTCCATCCTTTCTTCCACCTCCGCCCCCTTCTCGCACTACCAATCAGAGCCGTTCAAGCTTCCGCCCGGGGGCGGAACCCAAACTCCATGGCCCAGTCACAACAGACCGCCAGAGAAAAACTCGCTCCATGATCATTCTTCAGGACACCACCCATTTGCCAGTGGAGCCTGCCCCTATCGCAAGACCACAAACGCCTACCTCTGGAGCGGTTCCACCTGAACGTGGTCGCAGGCGTGGACCACCTGTGGAGAATCCGTATGCTAACGTAGGTCGTCTAAGTGCAGTCTACACTCCTACCAAGCCCCAGCGTAGAAAGAGCCCCCTAGTTAAACAAGGACCAGTTGAGGAGGGAGCTGCTACTCATACTAGTAGAGACCCTTCTCCTTTGGGAGGGTCACGGATTCCCCACAGTAGCCGAGCAGAGCAGTTCCAACAGCAAGTTCTCTCTGAGCGAGCTAGAATTACGCCTCCAGGGGCCCGACGCAGACCCAGCGTTTTTCTATCTGTAGAAGGGGGCGCGACTGAGCCTCAAACAACTCCGTTACTTTCTCAGTCACACTCAGTGGATGAGTTGGCCGAGTTGCCTCCACCTGCACCAATGCTTTCCCCTGGTCCACCACCAGGGGGCACCACTTTTATACACCCTCTAACAGGTCGACCATTGGATCCCTCCTCACCTCTAGCACTTGCACTGGCTGCACGAGAACGTGCCCTTAGTGGCCGGAATACACCAACACCTACGCCATCGCCCACACCTTCACCTACTCAAGGTCGAGCAGTGGAAAGACCAGAGACTGAAGGAGGAGCAACACCACCTGCTCCTCTTGAGGCTCCTCCATCTAATTCATGGAGAGACGAACCAGTCAGCATTACAGAAACGGCAAGCCAAGTGACTAGCGGTAGCCCAGGGTCTGGACGAAGCCTGGAAGAGGTACTTGTCCCACCCAGCGTGCAAGGTGTCCAATCTGCGCTGATGGATACAGAGCATACCCCACCGGCAGTTCCACCCACTCTACCTTCCCCTGCCCCTACCCTGTCAAATCTGACTGCTCGAAGTTTGACTATGAGCTCAGAGGAGGAAGCAGAGCCTTACACAGTGACACTACCCCCTGCATTACTCTCGTCCAGTGATGAGGAAACCAGAGAGGAGCTTCGAAAGATAGGTCTCGTGCCGCCCCCTCAACCTTTCGCTAATGGCCTTCTAATTAAAGAAACACCCAAAGCCACTCTAAGCATTTCACCTAGCGGATCACGGCCATCCATTGCAAAGACCTCTTCTGGGAAAGCAAGCGATTCTACGGCAGACTCTGGGGTTGAAGACCCACATATGGAGACCACCAGTACTGTTTCCACAGTCTCCAGCATGTCCACTTTGTCTTCGGAGAGCACAGACTCTGCCCATGCTAGCAAACCACGTTCTGGGGTGGGGCGTGGTCGCCCCGCCCATCTCAGGGACCCACTGCTTAAACAGTCATCAGACAGTGAGCTGCTTCCACACCCACCCAGCACAGGCCCCAGCCGTCCACGCTACCTATTCCAAAGACGTTCCAAACTCTGGGGGGAGGAGCCCCGGGGCCCGATGGGTGGGTCTGATGAAAGTCGGCCTGCTGCTATGGGAGCAGAGTTGCTAAGCAAAGACACACATTCTCTGGGGGAGGAACCACCAATGGGAGCACCTCTTGACCCTGGCAGGAGGTCACCTGTTGGAGGCGCTAGATGTGAGGAGAATGGAGAAGAGAGTAAATCGTAGGTTTTTAGCTCTACTCTTTAGTAGTCTAGGGGAGCTTCACACCATCTCTCAGCGGAGTTACGGCACCACCTTCACAATCCGGCCTGGCAGCCGATACCCAGTGACCCGTAGGACTCCAAGCCCTGGAGCCACACCAGAACGGAGTGAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38397 lncRNA downstream 30410 4102730 ~ 4106259 (-) True G25853
XR_006250582.1 lncRNA downstream 350949 3775440 ~ 3785720 (-) True LOC122342502
TU38219 lncRNA downstream 366340 3770121 ~ 3770329 (-) True G25739
TU38211 lncRNA downstream 394864 3710024 ~ 3741805 (-) True G25732
TU38209 lncRNA downstream 428775 3707589 ~ 3707894 (-) True G25731
TU38429 lncRNA upstream 14427 4176254 ~ 4176625 (-) True G25871
XR_006250551.1 lncRNA upstream 25140 4186967 ~ 4188728 (-) True LOC122342390
XR_006250562.1 lncRNA upstream 31732 4193559 ~ 4195145 (-) True LOC122342421
XR_006250566.1 lncRNA upstream 35018 4196845 ~ 4198357 (-) True LOC122342441
XR_006250561.1 lncRNA upstream 37978 4199805 ~ 4201576 (-) True LOC122342416
XM_043237748.1 mRNA downstream 3802 4128140 ~ 4132867 (-) False LOC122343333
XM_043237749.1 mRNA downstream 4003 4128140 ~ 4132666 (-) True LOC122343333
XM_043237754.1 mRNA downstream 11840 4121442 ~ 4124829 (-) True si:ch73-139j3.4
XM_043237750.1 mRNA downstream 90378 4040892 ~ 4046291 (-) True kics2
XM_043237751.1 mRNA downstream 148004 3985447 ~ 3988665 (-) True avpr1ab
XM_043237761.1 mRNA upstream 612 4162439 ~ 4164736 (-) False cdnf
XM_043237760.1 mRNA upstream 612 4162439 ~ 4164736 (-) True cdnf
XM_043237739.1 mRNA upstream 8854 4170681 ~ 4175192 (-) True dclre1c
XM_043237740.1 mRNA upstream 8854 4170681 ~ 4174993 (-) False dclre1c
XM_043236028.1 mRNA upstream 75958 4237785 ~ 4246176 (-) True tspan9b
TU38194 other downstream 532399 3602358 ~ 3604270 (-) False LOC122342823
TU38193 other downstream 534695 3601000 ~ 3601974 (-) False LOC122342822
TU38177 other downstream 559573 3548226 ~ 3577096 (-) False LOC122342819
TU38175 other downstream 589202 3534837 ~ 3547467 (-) False LOC122342819
TU38086 other downstream 1115212 3021062 ~ 3021457 (-) False LOC122342805
TU38442 other upstream 103099 4264926 ~ 4267495 (-) True G25880
XR_006250792.1 other upstream 569397 4731224 ~ 4757827 (-) False LOC122343492
unassigned_transcript_302 other upstream 603026 4764853 ~ 4764940 (-) True trnay-gua
unassigned_transcript_303 other upstream 603253 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_305 other upstream 1555219 5717046 ~ 5717133 (-) True trnay-gua_3

Expression Profile