RNA id: TU38457


Basic Information

Item Value
RNA id TU38457
length 640
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G25892
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4299667 ~ 4300306 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTCCCAATTAATGTAGTGATGTGTGCAGtaagggttttgttttttgttttttttaaatcatgtactctgaacttttcttttcacaggGTCTCCTTCAAATTTCTGGTTTTAATTCATACGGTTTCGTAGTTTTTAAAATTCGGTGTGCACAGCTtttttcaagagtgaaaactgaacGCAGAGTTGcttcattcatctctttttttttttttttttttttttttttttaccattttgctcaacagaaaatgattttcaggtgCATGTGCTTTAAGGTGCTTTGCTTAATTGAGCGTGTGACAAAGACTGCAACGCCCAAAGACATAtgatgcataataaacaaacagagctcaCAACCTTCAGCGTTTGTatgtctttttccatttaatttgtgctttgagcagggcagttatttgaaacattgcacTTGGATGCTTAAGACGCGACAGAGAGGATTCAAACGATTCCACAGCTTGCGcatgatgtgctgctttcagctgtcGGAGGAGGGTCATGGCATCCACTGGAAATCACTTGATGCTCGTCTTCTTCCTttcgcaaaagacaaaacagatccacCTTAACGTACTTCAGTCTGAACACGAAAAAGGAAGGGTggcatcattgaaaatgagtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38381 lncRNA upstream 46388 4252949 ~ 4253279 (+) True G25846
XR_006250578.1 lncRNA upstream 72436 4224583 ~ 4227231 (+) True LOC122342475
TU38359 lncRNA upstream 167115 4132108 ~ 4132552 (+) True G25827
TU38357 lncRNA upstream 169245 4130144 ~ 4130422 (+) True G25825
TU38356 lncRNA upstream 170039 4129339 ~ 4129628 (+) True G25824
TU38454 lncRNA downstream 22600 4322906 ~ 4323300 (+) True G25889
TU38501 lncRNA downstream 81869 4382175 ~ 4382506 (+) True G25927
TU38520 lncRNA downstream 130472 4430778 ~ 4431088 (+) True G25939
TU38521 lncRNA downstream 131317 4431623 ~ 4431958 (+) True G25940
TU38522 lncRNA downstream 132299 4432605 ~ 4435637 (+) True G25941
XM_043236162.1 mRNA upstream 119350 4176998 ~ 4180317 (+) True tmem243b
XM_043237764.1 mRNA upstream 123057 4175425 ~ 4176610 (+) True meig1
XM_043237745.1 mRNA upstream 128978 4164737 ~ 4170689 (+) True hspa14
XM_043237763.1 mRNA upstream 172860 4125348 ~ 4126807 (+) True lsm8
XM_043237757.1 mRNA upstream 178360 4115466 ~ 4121307 (+) True kitlgb
XM_043237894.1 mRNA downstream 114839 4415145 ~ 4429395 (+) True tspan12
XM_043237028.1 mRNA downstream 516742 4817048 ~ 4827652 (+) True adm2a
XM_043236167.1 mRNA downstream 532104 4832410 ~ 4840605 (+) False fbxo18
XM_043236168.1 mRNA downstream 533127 4833433 ~ 4840605 (+) True fbxo18
XM_043236549.1 mRNA downstream 541387 4841693 ~ 4847744 (+) True glt8d2
TU38370 other upstream 64423 4232908 ~ 4235244 (+) True G25838
TU38369 other upstream 68575 4229629 ~ 4231092 (+) True G25837
TU37969 other upstream 561073 3737502 ~ 3738594 (+) True G25551
TU37922 other upstream 797573 3481629 ~ 3502094 (+) True G25514
unassigned_transcript_301 other upstream 828532 3470366 ~ 3471135 (+) True LOC122343352
TU38543 other downstream 249857 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 249857 4550163 ~ 4628899 (+) True G25958
TU38659 other downstream 629165 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other downstream 635623 4935929 ~ 4942735 (+) False LOC122343397
XR_006250627.1 other downstream 1054026 5354332 ~ 5391626 (+) False pcloa

Expression Profile