RNA id: TU38522


Basic Information

Item Value
RNA id TU38522
length 3012
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G25941
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4432605 ~ 4435637 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctgaataaaaataagggTAGATAAAGATAATAGTGAGTTTAAAATAGCCTGTGAcgtaattgcaaaataaaagtcatgatATGGAGTAATGTTGTCAGATACAACTACTTGATATTTCTCGTAACTGCAACTTACAACGTTATATTTGACAGAGTGGCTATTCCTGTAATTTTGACCTTTTCTATTTGTTGCAGCTGAAGTTTGGGAttgcaattcagattttttttttcttgaagttTAAATTAGAATTTCCTTCTTTCAATAAtgaattaagattaataaaatgatcacaACACCATTGTcttttttatctgtattttaataGGACAATgaattaattctatttattcATAGACACTGCACCGGACTAAACAActggtttgtatttttttcattgtttttcaataattcatatattttaatgtccATAACACAAGCTGTAACAAATTCCAAAGGATCGTCATCACCTGGTAGTcgtttaaatgtacattatagCACAAACAGGAAGTCTGTTCTAAAAGTCCCTTGTGGATcccgaaaaaaaaagaagaaaaaaaaacaaaaaacagacacGTTCTTTGTGAATCTGTGAGCGCATGCACTCAGTCAATCCTGTCCTccaaacaggaaaaaataaaataaaatatccaaaCCTAAACAGATGGTCCAGCCTTTGCAGTCGTTGATTTAGAAAGTAAAATGTGAGACATTAATTTTGCTGTCCATTGAAATTaggagaaaagaagaaactGTAATAAACTTCACTACACCGAAGAACAAATTTACAGCACAGGTGCACTAGCAACACTCTCTCgtagttttctgttttcatcttttcttttttgtattttacaactgaaatacatttataatatataatcaacaccatttgagttttaaaaatatgcatttgtgaGATTCTATTCCCCCGGTAACCCTTTTAATACAAAGCATATCTTTACAAAAAGAATCTTGTTGCATAAGTCACATGGTAAAGCAAGAATGGGTGCAGGCATTGAGCAAGagggcagtggtgtgtgtgtgtgtatgtgtgtgtgtgtattgagcAAGGCGCATTAAGAGCTCCTCACCACAAATTGCACTGACATCGGtataaaaaatatcaacattataGACTATTTTCTTGCTAAATCCAGACATGAAATGGCAGAGAAGAGAGGTTTAATCTTTCAGgtgcagatattttttttttttacactttttgattaataataatacattttggatGAATCTCACAGACATATTTCTgtccaaaatcaaaataaattatattttgcttatacaaattttaaacagattttgtGCATTACTTTCTTGACAATTAAGCACGACGCCCCCCAAAACGTGTCATTACTGTGATgccaaaatacaaattttttttgtactatcaTTCTGAAGCATTATATATTTGCCTTTTGTTTGTATTATAGTAACGAAAATAACCATTGAGAAGGAGaatactaaaaaactaaaacaaattacGGTAATAGGAATTTGCATGGAGCAGAGTGCTGTTTTTAacgttatttttaaaacaagcaaagtATAATTCACTCTCTTTTGCTTTTGGATTGAAATAAACCTGAACGTGACTTTGTGAGATTCGCGTTTTTAAGTTCAACACTAAACGTCTTCGGCTGATCACAATGATATAATAATCTCCAAAACAGCACTAGGAATCTGAGTGGATGATTCTCAACTTGATGCCGTTATCCGGAAATAATAGAATATTTGCTGATAAAAGTACATCTTTAAAGGGAGGGACGGAAAAATAAGAACTCGGAAAAAATGTCCTGGTCGGGCTCTATGCTCTGGTCCACGCTGGCCCATTTCACCATGTGTACGACAACATGCACAATAATTTTAACGAAGATAATAAATAAGCacgttatttttcttttcacagttaGCTCGCAAACTTTGGAGTATAAAACGGAATGGCTAGTATTAGAGCTCAAGTCCACAAGCCTCcactttcaaatatattaaaacacaaaaggcGTTTCCTTTTCCATTTAGCTTTTTgccaccaaaaataaaaagaaggaTAACAAACATCTCATCAGGCCAGGCAAGGAGTGAACGCAACATGGGTGggacagagagagtgtgagacAGGATTTTCTCCATTTATCACCTGTATCAACAGGGCAATCTctcaaaacagctgttttcacaCACTTGTTGGGTTGGAAAGATCTATAACTAGGCAAAAGTAAAAAGCACACATTCTGACAGAAAGAGCCAATCCTTATTGCTCATGccgaattaaaaaaagacaaagacttACGCAAAACATGCAAGAGATCGAACTCgatcacacacgcacgcacgcaaaAGCATCCGACCGCACACTCTAGTAGAGCCCAGCTTTACTTTGAAGTATCAAAAGTGTGTGTATAGCTGTCTAAAAGTTTGTAAAATCCCGCCCCTGCTGGTACACTCCTTATTCGTCCCAAAATCTGGCGATCCCATCATATTGAAGACAACAGATTCAAAGACTCAcaatactgaaaaaattataGAAGCTGTAACAACCACAATGGTCATTGTTTTCCTTTATGGGTTGAGTAAAAGCCTATTGGACCCCAGCGTGAGTCACATGACGTATGGACCTAGAGGTGGAGCTGATGGAGCTCACAGAGACGGAGGGCTCTGGGCGggagctgattaaaaaaaaaaggtccagcTATGGCCCATCCTGCTGCAATGCCTCCTCCACAACACTAGGGGGCTCTGTCGATCCTTCCGCTCCAGCGTCCACTCGCTAAGTAAAACGGCTAATGGTCACGGCGGACGGTCTATAACGCCGACACCCTGACAATGTTGCTTTGCAAGAAGTCGGGCGAGCTGGCCGAGTCTCCGCCCTCGGGCGTGGTCACGGGCGGGGTGGGCATGCTGATGACAGCGGCAGTGATGTAGGACTGCTCTTCCGAATTCAGGGGTACTGTCTCCTCAAACTTGGCATTGAGACTGGAGCGGCTGTGTtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38521 lncRNA upstream 647 4431623 ~ 4431958 (+) True G25940
TU38520 lncRNA upstream 1517 4430778 ~ 4431088 (+) True G25939
TU38501 lncRNA upstream 50099 4382175 ~ 4382506 (+) True G25927
TU38454 lncRNA upstream 109305 4322906 ~ 4323300 (+) True G25889
TU38457 lncRNA upstream 132299 4299667 ~ 4300306 (+) True G25892
TU38575 lncRNA downstream 253738 4689375 ~ 4690783 (+) True G25981
TU38569 lncRNA downstream 295200 4730837 ~ 4743603 (+) True G25976
TU38607 lncRNA downstream 330227 4765864 ~ 4767821 (+) True G26008
TU38673 lncRNA downstream 545572 4981209 ~ 4994260 (+) False G26043
TU38674 lncRNA downstream 545572 4981209 ~ 4991489 (+) True G26043
XM_043237894.1 mRNA upstream 3210 4415145 ~ 4429395 (+) True tspan12
XM_043236162.1 mRNA upstream 252288 4176998 ~ 4180317 (+) True tmem243b
XM_043237764.1 mRNA upstream 255995 4175425 ~ 4176610 (+) True meig1
XM_043237745.1 mRNA upstream 261916 4164737 ~ 4170689 (+) True hspa14
XM_043237763.1 mRNA upstream 305798 4125348 ~ 4126807 (+) True lsm8
XM_043237028.1 mRNA downstream 381411 4817048 ~ 4827652 (+) True adm2a
XM_043236167.1 mRNA downstream 396773 4832410 ~ 4840605 (+) False fbxo18
XM_043236168.1 mRNA downstream 397796 4833433 ~ 4840605 (+) True fbxo18
XM_043236549.1 mRNA downstream 406056 4841693 ~ 4847744 (+) True glt8d2
XM_043236550.1 mRNA downstream 407647 4843284 ~ 4847744 (+) False glt8d2
TU38370 other upstream 197361 4232908 ~ 4235244 (+) True G25838
TU38369 other upstream 201513 4229629 ~ 4231092 (+) True G25837
TU37969 other upstream 694011 3737502 ~ 3738594 (+) True G25551
TU37922 other upstream 930511 3481629 ~ 3502094 (+) True G25514
unassigned_transcript_301 other upstream 961470 3470366 ~ 3471135 (+) True LOC122343352
TU38543 other downstream 114526 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 114526 4550163 ~ 4628899 (+) True G25958
TU38659 other downstream 493834 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other downstream 500292 4935929 ~ 4942735 (+) False LOC122343397
XR_006250627.1 other downstream 918695 5354332 ~ 5391626 (+) False pcloa

Expression Profile