RNA id: TU38575


Basic Information

Item Value
RNA id TU38575
length 385
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G25981
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4689375 ~ 4690783 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctgaTTGTCGGCCCTGGGTGCTGCTGAAGGGTCCCCGGCTCTCCCTGCCCAGGAATCCACCGAAAACGTCCCTAAAAGGGTCACCCCCCACCTGGGTGCTCTCTTCCACCCGCACCTCCCGTTTGGTCTCGCCAGCGCGGGTCTTGCTGATCTCGGTGCGTTCGGTTCGGGTGTAGGTGTGACTGCTGCGGGTGAAGGTTCGGGTGAGCCGCTCTTGGGCCGACACCATCTGAAACCAGTTCCCTACAGACGTGGAACCCTGGAATCTTAAGGTTGAGGTCACAAGTGCTGCCCACCGTGGCGATAGAAGGCGCCTGCCGCTTTCTGGTGATGCTCTCCTTCATTCTTCCCTCGCCCAGAACCTTCACTGTAAATGGACTTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38522 lncRNA upstream 253738 4432605 ~ 4435637 (+) True G25941
TU38521 lncRNA upstream 257417 4431623 ~ 4431958 (+) True G25940
TU38520 lncRNA upstream 258287 4430778 ~ 4431088 (+) True G25939
TU38501 lncRNA upstream 306869 4382175 ~ 4382506 (+) True G25927
TU38454 lncRNA upstream 366075 4322906 ~ 4323300 (+) True G25889
TU38569 lncRNA downstream 40054 4730837 ~ 4743603 (+) True G25976
TU38607 lncRNA downstream 75081 4765864 ~ 4767821 (+) True G26008
TU38673 lncRNA downstream 290426 4981209 ~ 4994260 (+) False G26043
TU38674 lncRNA downstream 290426 4981209 ~ 4991489 (+) True G26043
XR_006250776.1 lncRNA downstream 292438 4983221 ~ 4985211 (+) True LOC122343429
XM_043237894.1 mRNA upstream 259980 4415145 ~ 4429395 (+) True tspan12
XM_043236162.1 mRNA upstream 509058 4176998 ~ 4180317 (+) True tmem243b
XM_043237764.1 mRNA upstream 512765 4175425 ~ 4176610 (+) True meig1
XM_043237745.1 mRNA upstream 518686 4164737 ~ 4170689 (+) True hspa14
XM_043237763.1 mRNA upstream 562568 4125348 ~ 4126807 (+) True lsm8
XM_043237028.1 mRNA downstream 126265 4817048 ~ 4827652 (+) True adm2a
XM_043236167.1 mRNA downstream 141627 4832410 ~ 4840605 (+) False fbxo18
XM_043236168.1 mRNA downstream 142650 4833433 ~ 4840605 (+) True fbxo18
XM_043236549.1 mRNA downstream 150910 4841693 ~ 4847744 (+) True glt8d2
XM_043236550.1 mRNA downstream 152501 4843284 ~ 4847744 (+) False glt8d2
TU38543 other upstream 60476 4550163 ~ 4628899 (+) False G25958
TU38544 other upstream 60476 4550163 ~ 4628899 (+) True G25958
TU38370 other upstream 454131 4232908 ~ 4235244 (+) True G25838
TU38369 other upstream 458283 4229629 ~ 4231092 (+) True G25837
TU37969 other upstream 950781 3737502 ~ 3738594 (+) True G25551
TU38659 other downstream 238688 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other downstream 245146 4935929 ~ 4942735 (+) False LOC122343397
XR_006250627.1 other downstream 663549 5354332 ~ 5391626 (+) False pcloa
unassigned_transcript_304 other downstream 708097 5398880 ~ 5398967 (+) True trnay-gua_2
TU39144 other downstream 1091161 5781944 ~ 5853381 (+) False LOC122342465

Expression Profile