RNA id: TU38702


Basic Information

Item Value
RNA id TU38702
length 827
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G26062
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4840334 ~ 4841160 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCCCAATATTTACTCAGCATGTGcaacatatacatacagataTATACACGATTACGAATCCTCAAACAATGATATACAAATcacaaatacaaatgtctgggttcttttttaaaaactattttttcaaaatgtttaaaaaaataaaatcaaagcttATATAAATTAAGGTGCGatgatattaaacaaaaaaaaataagattagaGTTAGACAATGAACatacaatatacagtacaaaGCTTAAGTTAGTGTAATTACACACTTTgtctttatgtaaaaatgtatgtaggAATGACTATCATTCTTCCCATACGTCACTCATGTTACAACTAAGGACATAAAAGACAATCTTACACTGTGTTCCTCAACCTTGTGTCGATGACAACAGCTTTAATACTGTAGTTATCAAGGGAAAGGCCTTTCTaaatgtggcaaaaaaaaaaaaaaaaaaaaaaaaagcaacaggaAAAAGACAGCGATTCGTCTCTACATGTAAACACTGACATCAGTGTTTAGTGTCTTCAGGACAGGGCAAGTCTCAgtgtgggagaaaaaaaaaaaaaaaaaaatgggaaaaaaaaaaaaaaaaaaaaaaaaagtttaagaactgtgcaaaaaaaatcactccAGAAGACACAGAGGCAAAAGAGCACTTAAATGTGGGATTTAAAGTAAAGACAGCAGCATGGCGACGTTGATGGGCAAACCTATTCTTTCATTGGTATAGTTCATGGTTCTGACCCGTTCAGGTGGAGAGAGCAGGAAGGCTGCAGGTCCCACACGCTGCTCCACACAGGTCAAACACAGAACGCCGGCCGCATCCTCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38711 lncRNA downstream 1603 4838341 ~ 4838731 (-) True G26071
TU38710 lncRNA downstream 2705 4837007 ~ 4837629 (-) True G26070
TU38709 lncRNA downstream 3478 4836416 ~ 4836856 (-) True G26069
TU38708 lncRNA downstream 5869 4834022 ~ 4834465 (-) True G26068
TU38698 lncRNA downstream 12691 4824356 ~ 4827643 (-) True G26058
TU38714 lncRNA upstream 17481 4858641 ~ 4858846 (-) True G26074
TU38730 lncRNA upstream 48281 4889441 ~ 4892707 (-) True G26085
TU38756 lncRNA upstream 79413 4920573 ~ 4927617 (-) False G26100
TU38757 lncRNA upstream 79413 4920573 ~ 4928705 (-) False G26100
TU38754 lncRNA upstream 79646 4920806 ~ 4928705 (-) True G26100
XM_043236353.1 mRNA downstream 29245 4765856 ~ 4811089 (-) True sbf1
XM_043236351.1 mRNA downstream 29282 4765856 ~ 4811052 (-) False sbf1
XM_043236349.1 mRNA downstream 29282 4765856 ~ 4811052 (-) False sbf1
XM_043236348.1 mRNA downstream 29282 4765856 ~ 4811052 (-) False sbf1
XM_043236350.1 mRNA downstream 29282 4765856 ~ 4811052 (-) False sbf1
XM_043236547.1 mRNA upstream 6702 4847862 ~ 4853674 (-) True hsp90b1
XM_043237819.1 mRNA upstream 105557 4946717 ~ 4957809 (-) True LOC122343386
XM_043237789.1 mRNA upstream 168711 5009871 ~ 5023591 (-) False ppfibp1a
XM_043237788.1 mRNA upstream 168711 5009871 ~ 5023590 (-) False ppfibp1a
XM_043237787.1 mRNA upstream 168711 5009871 ~ 5023590 (-) True ppfibp1a
unassigned_transcript_303 other downstream 75167 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 75394 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 82507 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 572839 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1236064 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 875886 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 877852 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 888858 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 888858 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 888858 5730018 ~ 5736946 (-) False G26408

Expression Profile