RNA id: TU38730


Basic Information

Item Value
RNA id TU38730
length 2561
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G26085
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4889441 ~ 4892707 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTATgttaattatcattaaaaaataaataattactggCTTATAGTTTTTGTCCTAAATTGTAACTATCAGAGAATCCTTACAATATAATCCATATATTACTAAAGATTATATTAAGCAATACaaaattgatttatatttaatttacttttgctTATTGCTTAACTGAAACTGTAAGAGTAACagataaagaaacagaaacttCTCATACTCACCACTTCAGGTTCCCGTAGTTCTCCTTCAGGTAAGGAGGCGCCATTCATCCTCGCGATCCAGTTAAGTGTTGACATGGCTCCTTGTACATTGCCTGCTGAGACCTGGAACCGTGCAGACTCGGGAATAaactaaaaaaggaaaagaaagagctTAAAGGCAAGTGAGTCAAAGACAAACATCTGCTTCCGTTTCTAAAACCATTTAGACGAAACTCACCATGAAGAGTCCAATGAGAATGATGCTGGGGATTATAGAAAAACGGATCATCCAGCGCCAACCCATTGTAGGCACCACTGTCATACCgagaataataataagcataGAACCCAGCATCCAGAAGACCTGTCGACCAATCACAGGTAAGGTCAGAATTAAAGGTTTCCCAATTGAAGGTCAAACGTAACTTCACATTTTGCACTCACCGCGGCAAGAGGCAGCAGAAAAGCTCTGTATTTGGCTGGGATGAATTCAGTCTTCAAAACAAACCTTTAGAGAGGAAATAGCAGAGAATTAGAGGAATAATTCATTGCATTGGAATGATTTactaatgaatcattcaaagcTATTTTGAACCAGTTTGTGAACCAATTTatgaaagaaaagataaaaataaagttgcaatGCCATTGCAGTCCACGGTTCTTTacagaaccatctctttcttacctttttataatgtgaagaaccttttttcacCACCTTTTATGAAGTTCTTTATTGATCCGTTTAGACAGATCAATGGcattgtgaagcacctttattttttaacagtgaaCTTGCTCACATATAAATGTTTCTATGCCTTACAAGTCTAATAACAAAAAGCCAAAACTGATAGGTGTacttgtataaatatatgtgacTTATATCACACAATATCACCCTTGAGATGTTGCTGCAACACCACAGCCCACCATACAGCGCAGGAAGATGAACCATCCATACGATGGAGAGAATGAAGTGAGCAGAGAAAAATACGATGCCCATATAAAGCCTCCAAACACCACCtgtgcacaaaaacaaatgtatttaatctaatttatcaTAATTATCCGTCAAATGAAACATCGCCTGACCTTCCAACGTCCATATTTGTCGGCAACATAACCACAGAGGACGCCACAGACCATGAAACCGAGGAACACCATCTGAAatcatgcacaaacacaaacaaagtaaGGCcgtaatttattattcatgcatTCTTTAGAAAAAAGTGTGCGCAATGCATTTTTACGCACTAGatttcatttgcatataaatctAGGACACAAGGAAGCTTTTAACATGAAATACACCTTACATCACCTTTAAAAAAGGTCAACCAAACTAGTCAGACGGTCACATGCGCGCACCTCGCACCACAACATTCCATTCCTGTCAAACTTCAGAgcgaaaacaaaataaagggcTCTGATTGGACGATCTCCTCACCGTGGAGACAAGGGCCACCTGCCAATCCTCTAGACGCCATTCGCAGCGGATCTCAGGAGAAACCACAGCCAACAACATGATCTCCATTGCCTCCACTATCTACACACACAGCACATCAACAATAAAATGAGTGAACAGAACAAAAAACGCAGCGGTTAATTAAGTACAGAGATGCGCTTTTCTTACATTGGCACTACCCATGATGACAAAAAGCAATATGTGGAAGCGTCCGAAGCCAATGCTCTCCACAGCCTCCTCCACGGTGTAGCATTTTGGTTCTGTTTGGGCTATAGAGGTCAAAAATCACTTGAGGCGATTGGACGCTACTTGACTGCTCACGAGTAGAGTAGTATAAACGCAAGCGCTTTGGCTTAGCTGTTTTGTTTGTACGTTCTTCACCTTTGGCCTCAGCAGCTTCGGCATGTGTGCTATTACTGCTACTTGTGTTGatctcctcctccagctccacTTCCTGAAGCTGGATGGCATTGACCAGCTGGGTCTTCATGGAAGACGAGCGCTTTAATGCCATCCTGTTTAAAAAGTCTACTTATTTCCTGAATAGTAGGCACTGAAAAGTGAAGTATAACATCGGATGATGAAGTGAGGTAATCAAACACGATGCTCCGTCACGTCGACCCTTTTCCCATCGCGTCCCATCCAGGTGGACACTTTTTAGTTATGCCGTACTTCCCCCCGCAAGAATTCCCGTATGTTGTGCCAAAAAGCTTTCAGCGATTTATGCAAATCAGTCTCGCAGAGAGCTGATAAAATAACTCCGGCGGGTTTTTAAACTATAAACCCAATCGGTATCTATCACGAATGTCCTAAAATCCAACTTCAGTCTCTGTATAGATGTTAATACTCCCTTTGGAAAGATGCATCATCAACCTCTCCGGCAGTAACACCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38714 lncRNA downstream 30595 4858641 ~ 4858846 (-) True G26074
TU38702 lncRNA downstream 48281 4840334 ~ 4841160 (-) True G26062
TU38711 lncRNA downstream 50710 4838341 ~ 4838731 (-) True G26071
TU38710 lncRNA downstream 51812 4837007 ~ 4837629 (-) True G26070
TU38709 lncRNA downstream 52585 4836416 ~ 4836856 (-) True G26069
TU38756 lncRNA upstream 27866 4920573 ~ 4927617 (-) False G26100
TU38757 lncRNA upstream 27866 4920573 ~ 4928705 (-) False G26100
TU38754 lncRNA upstream 28099 4920806 ~ 4928705 (-) True G26100
TU38776 lncRNA upstream 51421 4944128 ~ 4946061 (-) True G26109
TU38793 lncRNA upstream 115919 5008626 ~ 5008998 (-) True G26121
XM_043236547.1 mRNA downstream 35767 4847862 ~ 4853674 (-) True hsp90b1
XM_043236351.1 mRNA downstream 78389 4765856 ~ 4811052 (-) False sbf1
XM_043237819.1 mRNA upstream 54010 4946717 ~ 4957809 (-) True LOC122343386
XM_043237789.1 mRNA upstream 117164 5009871 ~ 5023591 (-) False ppfibp1a
XM_043237788.1 mRNA upstream 117164 5009871 ~ 5023590 (-) False ppfibp1a
XM_043237787.1 mRNA upstream 117164 5009871 ~ 5023590 (-) True ppfibp1a
XM_043237960.1 mRNA upstream 184945 5077652 ~ 5083675 (-) True LOC122343475
unassigned_transcript_303 other downstream 124274 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 124501 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 131614 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 621946 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1285171 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 824339 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 826305 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 837311 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 837311 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 837311 5730018 ~ 5736946 (-) False G26408

Expression Profile