RNA id: TU38776


Basic Information

Item Value
RNA id TU38776
length 1881
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G26109
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4944128 ~ 4946061 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tGGTTAAACAGTAATGCACATGTCACTTGGTAATAAATTATCCTGATAATTGAATACTTTATAATGATGCAACTATTTAGTCTGTGGATCAAAATATACCTATAGCACTCACAAACTGAGTAGGaatgtatttcagaaaaatgacaAGAGCGACAAACGGTTGGCAGAGGTTATGGCTTATAAGTTAACTCTCATTGCATGCTTTCAGGTGCCATTGCATGATACTGTTTGTTTTCAAGAGAGGCCGTTATTAGGTCTTTCTCCCCCTCTATTTCCTAACCTCTATATCCTGCATCCTTTGATCTCATCTCCCTCTCTTCCCTGACGGTAGGCGGGGTAGGACAGCTCGTTTGCCTCCCAGCAGTACAGATGCACTTTGAAAAGATCAGTGAGCgagaaaacaaagagagtaGACAGAGACGAGAAGAGAGTCACCAGGACACAAAGCCCCAGAGCAAGCAGATGACTAGTCCAGACTCTCTCTCATACATGGAACATATAAACACAATCATACTTCTAACAAATGAAAGCAGGGGAGAATGGGGTAAGCTgtgacatttttcaaatatgtaactgacagaaatgcattaaaacaatcagaataataattaatcggatatttaaataattaatgtgtaagtaatataatatatatatatgactctgGAGCACAAACCTTTATCTTAAGTCgctatttgtagcaatagacaaaaatacatagtgtgggtcaaaattatatatttttttctttttatgacaaaaacattagaacatttaagtaaagatcatgctccatgatgatattttgtaaacttcctactgtaaatatatcaaaattaaatttttatcagtaatatgcattactaagaacttaatttaaatttagaatttaaattaagaatttaatttaaattatatttacatgttttcgCACCTCAGATTCCAAAtaaataggacaatatttgtctgaatATTCCATCTTAACAAGCTATAcatcaaagaaaatattattcagaTTTCAGGTGATGTATAAAATTCAATTTGGAAAAAATGACCCTTATGACAGGTGTTGTGATTcatggtaatatatatataaattatatttatattatattgtataataatatttaaaatacataaaattataataaaaagataataatgtaataaatcatgtaataaaaactatgagatccttttttgaaaatctataaatctgaagaataaaaaaaatagactaCGGGGGTGGCACATCTTACCCCACTCTCCCTAACACTTAAGTCATCAGATAAAGGATTGTTTGTGTTCAattgtacagtacatttatgtgaatgtgaaatatatacagCATGCCATTGATATATTACATCAGCAAAGGGAACTGCATCTACATCTACACAAGTGTCCAATACAGAAATAATGAATGTATCCTTTTACGAGCGTTGCAAATCTTCAAAATCCGATTTTACATCATGTGGGCAAATTTATAAAGTTCATACGCTAACGGACTACTTCCAATACCGCTTGGCTTAACAGCTGCAAAAAACCGTAATTGCTTCTTACAATGCATTCCCTTCATTAGTTTTCATCTTACAGTTGCTGTTAAACCTCAGGCCAAAAAAAATTGCCACTCAGCAGCCGAGCAAAAATATCTACAGTCtgttctgtttaattaaatCTGATAGACTcgagcagagaaaaaaaaaatacagcttcaTATCCACTGGTAATAGTTTGTGATGGCATGAAGCTGGGCTGGAAATAATACATAAGGTGTTCAGAGAGTTTTTATCGTGTAACACTGGGTTTCCTCTAGGCATCATACTTTTTTCCCGCCCTGTGGATCTGCTGGTACAAGGTCATGGAGAATGCCATCCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38757 lncRNA downstream 15423 4920573 ~ 4928705 (-) False G26100
TU38754 lncRNA downstream 15423 4920806 ~ 4928705 (-) True G26100
TU38756 lncRNA downstream 16511 4920573 ~ 4927617 (-) False G26100
TU38730 lncRNA downstream 51421 4889441 ~ 4892707 (-) True G26085
TU38714 lncRNA downstream 85282 4858641 ~ 4858846 (-) True G26074
TU38793 lncRNA upstream 62565 5008626 ~ 5008998 (-) True G26121
TU38905 lncRNA upstream 139775 5085836 ~ 5086939 (-) False LOC122343483
TU38906 lncRNA upstream 147730 5093791 ~ 5094514 (-) False LOC122343483
TU38911 lncRNA upstream 176411 5122472 ~ 5122750 (-) True G26225
TU38912 lncRNA upstream 178007 5124068 ~ 5124515 (-) True G26226
XM_043236547.1 mRNA downstream 90454 4847862 ~ 4853674 (-) True hsp90b1
XM_043236351.1 mRNA downstream 133076 4765856 ~ 4811052 (-) False sbf1
XM_043237819.1 mRNA upstream 656 4946717 ~ 4957809 (-) True LOC122343386
XM_043237789.1 mRNA upstream 63810 5009871 ~ 5023591 (-) False ppfibp1a
XM_043237788.1 mRNA upstream 63810 5009871 ~ 5023590 (-) False ppfibp1a
XM_043237787.1 mRNA upstream 63810 5009871 ~ 5023590 (-) True ppfibp1a
XM_043237960.1 mRNA upstream 131591 5077652 ~ 5083675 (-) True LOC122343475
unassigned_transcript_303 other downstream 178961 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 179188 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 186301 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 676633 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1339858 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 770985 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 772951 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 783957 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 783957 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 783957 5730018 ~ 5736946 (-) False G26408

Expression Profile