RNA id: TU38793



Basic Information


Item Value
RNA id TU38793
length 373
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G26121
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5008626 ~ 5008998 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCAGCGTTTGTatgtctttttccatttaatttgtgctttgagcagggcagttatttgaaacattgcacTTGGATGCTTAAGACGCGACAGAGAGGATTCAAACGATTCCACAGCTTGCGcatgatgtgctgctttcagctgtccCGGAGGAGGTCATGGCATCCACTGGAAATCACTTGATGCTCGTCTTCTTCCTttcgcaaaagacaaaacagatccacCTTAACGTACTTCAGTCTGAACACGAAAAAGGAAGGGTggcatcattgaaaatgagtcctgtaagacataagaaatgttctcagttagaatgttcttcccgcgggatgcatgcacttctgtttattaaccgctttCTCTTTTTGCGGGGTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38776 lncRNA downstream 62565 4944128 ~ 4946061 (-) True G26109
TU38757 lncRNA downstream 79921 4920573 ~ 4928705 (-) False G26100
TU38754 lncRNA downstream 79921 4920806 ~ 4928705 (-) True G26100
TU38756 lncRNA downstream 81009 4920573 ~ 4927617 (-) False G26100
TU38730 lncRNA downstream 115919 4889441 ~ 4892707 (-) True G26085
TU38905 lncRNA upstream 76838 5085836 ~ 5086939 (-) False LOC122343483
TU38906 lncRNA upstream 84793 5093791 ~ 5094514 (-) False LOC122343483
TU38911 lncRNA upstream 113474 5122472 ~ 5122750 (-) True G26225
TU38912 lncRNA upstream 115070 5124068 ~ 5124515 (-) True G26226
TU38914 lncRNA upstream 150087 5159085 ~ 5159407 (-) True G26228
XM_043237819.1 mRNA downstream 50817 4946717 ~ 4957809 (-) True LOC122343386
XM_043236547.1 mRNA downstream 154952 4847862 ~ 4853674 (-) True hsp90b1
XM_043236351.1 mRNA downstream 197574 4765856 ~ 4811052 (-) False sbf1
XM_043237789.1 mRNA upstream 873 5009871 ~ 5023591 (-) False ppfibp1a
XM_043237788.1 mRNA upstream 873 5009871 ~ 5023590 (-) False ppfibp1a
XM_043237787.1 mRNA upstream 873 5009871 ~ 5023590 (-) True ppfibp1a
XM_043237960.1 mRNA upstream 68654 5077652 ~ 5083675 (-) True LOC122343475
XM_043237970.1 mRNA upstream 76092 5085090 ~ 5094640 (-) True LOC122343483
unassigned_transcript_303 other downstream 243459 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 243686 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 250799 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 741131 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1404356 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 708048 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 710014 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 721020 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 721020 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 721020 5730018 ~ 5736946 (-) False G26408

Expression Profile