RNA id: XM_043237970.1


Basic Information

Item Value
RNA id XM_043237970.1
length 4926
RNA type mRNA
GC content 0.46
exon number 20
gene id LOC122343483
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5085090 ~ 5094640 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGTTGATGGTCCCAGTCGCTGTGCTGGTAGAGTGGAGGTTCTTCACAGAGGTCAGTGGGGAACAGTGTGTGGCGATGGCTGGGATTTAGCTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGAGTGGTGCTCATTTTGGTCTGGGATCAGAACCATTCTGGATTAAACATGCAAAGTGTACTGGATTGGAGTCAGCACTTAAAAAATGTGGATCCATGTATTCACTTATTTATGACAAGTGTCTTGAAAAAAACGCTCAAGTCATTTGTTCAGaagttAGGTTGGTTGGAGGCTCTCGCTGCTCTGGGAGGTTAGAGATACTTCATGATCAGTCGTGGATGTCAGTGTGTGAGTCTGTCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGAAGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACGAGAGATTCAGTGCAGAGGAAATGAGTCTCAGATTCACCTCTGTCCAACATCTCCATCACATGATAACAACTGTTCACATGAAAACAGTGCTCAACTGATGTGTGCAGGAAGTGTGAGAGTGAGGTTGGTTAATGGTACTGGTCACTGTGCTGGTAGAGTGGAGGTTCTTCACAGAGGTCAGTGGGGAACAGTGTGTGATAGTTTTTGGGATATGTCTGATGCTGCAGTGGTGTGTAAAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGGGTGATGCTCATTTTGGACCAGGATCTGGACAAATCTGGACAAATCGCAAGTTATGTATTGGATCAGAACCTTCACTGAAGAACTGTGGAGCGGTAGAATGGGGCCCATTTCCCTGTGATCATACTAAAGACGCTGGAGTCATCTGCTCAGGTGTCAGGCTTATTGGAAATTCCAGTTGCTCTGGGAGGTTAGAGACACTTCAAAATCAGTCATGGATGTCAGTGTGTGAGTCTGTCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGAAGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACGAGAGATTCAGTGCAGAGGAAATGAGTCTCAGATTCAAATGTGTCCAACATCCTTACACAGAGACAGTTGTTCACGTGATGATAATCAGGGGCTGTTCTGTGCTGATAAAAAGAATGTGAGGTTGGTTGATGGTCACAGTCGCTGTGCTGGTAGAGTGGAGGTTCTTCACAGAGGTCAGTGGGGAACAGTGTGTGATCTTGGTTGGGATATGTCTGAAGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGGGTGGTGCTCACTTTGGACAAGGATCAGGACCAATATGGATGTATCTCGTGATTTGTACTGGATCAGAGTCTACACTCAAGAACTGTGGTTCATCAGGATGGAGAAAACACGAATGTACTCACAGTCTTGATGCTGGTGTCATCTGTTCAGGTCATAAGTCTTCCAGACTCATTAATGGATTTCATCTGTGCTCTGGGAGGTTAGAGATACTTCATGATCAGTCGTGGATGTCAGTGTGTGAGTCTGTCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGAAGCTGCTTTTGGAAAAGGAGACACTCAGATGTGGACACGAGAGATTCAGTGCAGAGGAGATGAGTCTCAGATTTCATTTTGCTCAATATCACACAACCATAACTGTACCAGTGACAAAGTTGTGGGACTTATCTGTTCTGGTTACATAGATCTTAAACTGGTAAACAGTGCAGACTCTTGTTCAGGAAGAGTGGAGCTTCAGTTCCTCAATGAATGGGGCACAGTGTGTGTTGCATGCTGGGATATGAGAGCTGCCAGTGTCCTCTGTAGACAGCTGAATTGTGGGATTGCTGTGTCTGTTGTGGGATCAGACTGGTTTGGAGAGGGAAGTGGTGAAATCTGGGCTGATGTGTTTGATTGTGACGGGAATGAAACAAAACTCTCAGAATGTTTCATCTCTTCATGGAGTCGAGCTGAACGTTCTCATAGAAGAGATGTTGGAGTTATCTGCTCTGGTTCCTCTCTGGCTCTTCATGATGGTCTGGTGCGGTTGTCTGGAGAGAGACAGTGTGAGGGGGAGCTGGAGGTTTTCTTCCATCAGGTCTGGAGGAGAGTTCTGCTGGACTCCTGGAGTCTCACTGAATCCTCTGTGGTCTGCAGACAGCTGGGCTGTGGCTCTGCGCTCAACTTCTCCGGCTCCTCTTCATCCAGTCCTGAACACAGTCATGAGTGTGTGACGGGCTTCCAGTGCTCTGGGAGTGAAGCTCATCTGGGGAACTGCAGCTCTCCACAAACTCTCAACTGCAGCTCCACACAACAGCTGTCCATCACCTGCCTTGGTCGCGGGTCCATCAGGCTGGTGGGTTCTGGGGGAGACTGTGCAGGGAGGCTGGAGGTTTTTCACGGCGGCTCATGGGGGACAGTGTGTGATGACTCCTGGGATATTAAAGATGCCCATGTGGTGTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTAACCAGCAGGTACCAGCCTGGTTTGGTCCTGGTTCTGGACACATATGGCTGGATGAGGTGGAGTGTGAGGGGAATGAGACGTCCCTGTGGAGCTGCTCTTCTCCAGGCTGGGGACAACATGACTGTAATCACAAGGAGGATGTAGGAGTCGTGTGCTCAGAGTTTAAAGAGATCAGGTTAACTGAAGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGTAATGTGTGCTGGAACCAGATGGACAGAGACACAGCGAGTCTGATCTGTCAAGAACTGAACTGTGGAAGATCTGGCAGTGAACCCAGTTATTCAGAGGGACTGAAGTCTCGTAATTGGCTGGATAAACTTAAGTGTCGACGACACGATTCCAATTTATGGCAGTGTCCCTCTTCACCCTGGGGACAGAATGACTGTGATAATAAAGCCGCCAAAATCACCTGCTCAGAGGAGAAGAGTCAGTCTCCACAGGGCCATCTGACATGTTCAGCATCTCCTCACCAGAGACAACATTCAAATCATGTTCCTCTCAGACTGAGTGGAGGTAAGGGCCGGTGCTCTGGGAGGCTGGAGGTGTATCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCAGTGGGACATCAGAGATGCTCAGGTGGTCTGCAGACAGCTGGGTTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGTCTTTGGTGCTGGTGAAGGTGTTGTGTGGATGAACAGAGTCGAGTGCAGAGGGAATGAGATTCACCTGTGGGACTGTCCTCTCTCCCTGAAAAACCACACTGACTGCTCCCACAAAGAGCACGCTGGACTCACCTGTGCAGATGTTTCAGATGTGTCAGTGTCCTCTACTCCTGACACAACAACATCAGTTTCTCCTCCAGTGCGCTCAACATCAGTCTCTCTTTCACAAACTCCTCCAGCAGAGTCTCTCTCCGTCTCCCCAGAGCTTGTGATTGTTCTGGGAGTTGTGCTCTTACTGCTCTTAGTGCCACTGCTTATACTGATTCAGCAGAACAGAGTGATGAGGAGAGCTCTCTCTGACTGGTACACAGGACTTCACAAGACACCTACAGAGCCAGTTTATGAGGAAATTTATCACAGACACAATCATGTCACTCAGACAGTGAGTTTGATCTCTGAAGAACAGAATTCTGGGTATGAAGATATTGATGAGCTTCTCTCAGGATACtatgatgatgtcatcattgATGGATTAAAATCAGATCACCAGAAAGAAGACACTCCAGAGGACTATTATGATGATGCCATTACTAGTGGACAGAACTATGtggaCACACCAGACGGTTACGATGATGTCATCATTAGTAGACAGTGCTCTCAAGCAGaGGAAAATCAGGAGGagtatgatgatgatgatgatgtggaGAACAACAATGAAGATGAGAGAAACCTGTTAGACTATGATGATGTAGGGGAGGAGTGAAATGATGAAGCAGGGGCCACACTTCTGACTGAAGTTTCTGGAGggttttttcattgtttttgattaatttacttTAGATTCATAAACATATCTTGATACAACATAATTACACAAACCATCATTTAGTGAGTTGATTGTCATGATTACTACAGTTCAGGGTCAGGTTTAAATGTTTGGTTTCCTGTTTTCTtaaccttttattattatttattttgtcagagATTAGCTTTAATATTTTGCTTATGTCTGTTGTGACTTGcaatggggtttttttctcagttttataTGAACttttaagcagaaaaaaactttaaactttaCTATGCCAGctatattatttacttatatgcAATGATAGGCTACTGACTGTGAATGAAAGGAACGTTTTTCAATTGAATTTTTCaagttcaaaatgtattttattttaagcgaATATAAAGTAGTTTGGAGTATAACAATTGCTCACCCTTCGACATTGTCACAAACACAGTCTCAAAATAAATAGAAGGAAACATTCTGAGGCtcagaacaaaaaaagacagGGATATGTCTGATGCTGCATTGATCTGAAGAGAGCTGAACTGTGGAGAACCTGTAGATGCTCTTTCTAAGGCACACTTCGGCCGAAGTTCAAGAGCAATCTGTAGTCTTGTCAAATGTGTTTGTTCAGAATCCACTATAAAGGACTGTAGGTCAGCAGGATGGTACCATATTAGAGATGCTGGAGTCAGAAGATAAACTGTCCCAAACCCTGccatcaataaaaatgtatctgtcttgactttttttacttaactttttaatcaaaatatatttttaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38793 lncRNA downstream 76092 5008626 ~ 5008998 (-) True G26121
TU38776 lncRNA downstream 139029 4944128 ~ 4946061 (-) True G26109
TU38757 lncRNA downstream 156385 4920573 ~ 4928705 (-) False G26100
TU38754 lncRNA downstream 156385 4920806 ~ 4928705 (-) True G26100
TU38756 lncRNA downstream 157473 4920573 ~ 4927617 (-) False G26100
TU38911 lncRNA upstream 27832 5122472 ~ 5122750 (-) True G26225
TU38912 lncRNA upstream 29428 5124068 ~ 5124515 (-) True G26226
TU38914 lncRNA upstream 64445 5159085 ~ 5159407 (-) True G26228
TU38925 lncRNA upstream 145691 5240331 ~ 5241780 (-) True G26237
TU38983 lncRNA upstream 247858 5342498 ~ 5344870 (-) True G26270
XM_043237960.1 mRNA downstream 1415 5077652 ~ 5083675 (-) True LOC122343475
XM_043237789.1 mRNA downstream 61499 5009871 ~ 5023591 (-) False ppfibp1a
XM_043237788.1 mRNA downstream 61500 5009871 ~ 5023590 (-) False ppfibp1a
XM_043237787.1 mRNA downstream 61500 5009871 ~ 5023590 (-) True ppfibp1a
XM_043237819.1 mRNA downstream 127281 4946717 ~ 4957809 (-) True LOC122343386
XM_043236960.1 mRNA upstream 5724 5100364 ~ 5102901 (-) True LOC122342827
XM_043236973.1 mRNA upstream 8373 5103013 ~ 5194668 (-) True LOC122342833
XM_043237963.1 mRNA upstream 32161 5126801 ~ 5156735 (-) False tmtc2a
XM_043237962.1 mRNA upstream 32164 5126804 ~ 5156734 (-) True tmtc2a
XM_043237965.1 mRNA upstream 66470 5161110 ~ 5170510 (-) True mettl25
unassigned_transcript_303 other downstream 319923 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 320150 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 327263 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 817595 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1480820 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 622406 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 624372 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 635378 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 635378 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 635378 5730018 ~ 5736946 (-) False G26408

Expression Profile