RNA id: TU39034


Basic Information

Item Value
RNA id TU39034
length 301
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G26314
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5505072 ~ 5505372 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GgaaaaatgattacatttctattttcagcaattttcttcgtcacgtgatccttcagaaattatgctgataagaaacatttcttaatatttatcaattttgaaagcagttgtgctgctcaaCACTTTTGTGGAAGATTTCACGATTCTTTGCTAAACCGaaggaataaaatgtaaaacttttattttcaaatataaatattttgtaccagttgtttcattaatttaacaaaatctATCTTCATCTCTAGGTCTCTCCCTTCACACTACTCTCTGTCAGATCTaatgtttaaacaaatgcaga

Function

GO: NA

KEGG:

id description
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38876 lncRNA upstream 299767 5204113 ~ 5205305 (+) True G26196
TU38828 lncRNA upstream 382318 5122473 ~ 5122754 (+) True G26156
TU38827 lncRNA upstream 386830 5117982 ~ 5118242 (+) True G26155
TU38820 lncRNA upstream 393443 5111364 ~ 5111629 (+) True G26148
TU38817 lncRNA upstream 400731 5104031 ~ 5104341 (+) True G26145
TU39038 lncRNA downstream 3931 5509303 ~ 5509795 (+) True G26318
TU39044 lncRNA downstream 8184 5513556 ~ 5513972 (+) True G26324
TU39045 lncRNA downstream 8980 5514352 ~ 5514581 (+) True G26325
TU39053 lncRNA downstream 13561 5518933 ~ 5519157 (+) True G26333
TU39054 lncRNA downstream 14102 5519474 ~ 5519856 (+) True G26334
XM_043236456.1 mRNA upstream 87085 5412647 ~ 5417987 (+) True asb13a.2
XM_043236455.1 mRNA upstream 92508 5410196 ~ 5412564 (+) True asb13a.1
XM_043236453.1 mRNA upstream 95030 5401464 ~ 5410042 (+) True gdi2
XM_043236454.1 mRNA upstream 104159 5398333 ~ 5400913 (+) True ankrd16
XM_043236673.1 mRNA upstream 107186 5354343 ~ 5397886 (+) True pcloa
XM_043236195.1 mRNA downstream 16381 5521753 ~ 5540119 (+) True mkln1
XM_043236303.1 mRNA downstream 199109 5704481 ~ 5715620 (+) True cry1a
XM_043236305.1 mRNA downstream 213637 5719009 ~ 5720254 (+) True tnnt2c
XM_043236287.1 mRNA downstream 345116 5850488 ~ 5862313 (+) True LOC122342465
XM_043236976.1 mRNA downstream 357235 5862607 ~ 5898827 (+) True LOC122342837
unassigned_transcript_304 other upstream 106105 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 113446 5354332 ~ 5391626 (+) False pcloa
TU38659 other upstream 562337 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 562337 4935929 ~ 4942735 (+) False LOC122343397
TU38543 other upstream 876173 4550163 ~ 4628899 (+) False G25958
TU39144 other downstream 276572 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 345057 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 387613 5892985 ~ 5897771 (+) False LOC122342837
TU39399 other downstream 883465 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1720149 7225521 ~ 7227437 (+) True G26692

Expression Profile