RNA id: TU39039


Basic Information

Item Value
RNA id TU39039
length 464
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G26319
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5509304 ~ 5509767 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAGAATGTTGTTTATCTGTGTCAGCTGTTTATTGGCTGCTGGGATTGTGGTCTGGCCATGTGACCTGACATTGTTATATCATTTACTAAAATTAGCACAAACACTTACAAACCGCATGTACTTGCTAACACGAACACAAACAAGCCATCTTTAAGATACGATCACTGTTTTGAGATACATTTTAGCCAAACCCACAGCCTTCATTGTGGCGTTATGGGTATATTCATAGATCTACACGCACACAACACTTGAGATAAATGCTCACAATCACTCGCTCGCCTGCTGAAAAGATGACAATGTGTCCAGACACTGTAAAATACAGAGCTGTCACACGCTCGCAAGTACATAGACACCTTGGCACACACGCACTAATCTGGCACGCGGCgtacaacacaacacacaaattcaTGCCATGCTTTCCCAGTCCCCCAATCCAATGTCCTGTGGTGTgacaacaaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39037 lncRNA downstream 203 5508871 ~ 5509101 (-) True G26317
TU39036 lncRNA downstream 1575 5507496 ~ 5507729 (-) True G26316
XR_006250758.1 lncRNA downstream 5828 5487063 ~ 5503476 (-) False LOC122343358
XR_006250757.1 lncRNA downstream 10455 5487063 ~ 5498849 (-) True LOC122343358
TU39023 lncRNA downstream 14661 5487097 ~ 5494643 (-) False LOC122343358
TU39040 lncRNA upstream 225 5509992 ~ 5510259 (-) True G26320
TU39068 lncRNA upstream 9336 5519103 ~ 5519339 (-) False LOC122343358
TU39085 lncRNA upstream 45375 5555142 ~ 5569372 (-) True G26359
TU39086 lncRNA upstream 45375 5555142 ~ 5557854 (-) False G26359
TU39090 lncRNA upstream 50005 5559772 ~ 5569372 (-) False G26359
XM_043237090.1 mRNA downstream 33122 5454172 ~ 5476182 (-) True net1
XM_043237091.1 mRNA downstream 48083 5454172 ~ 5461221 (-) False net1
XM_043237942.1 mRNA downstream 274248 5224238 ~ 5235056 (-) True prmt8b
XM_043237943.1 mRNA downstream 274251 5224238 ~ 5235053 (-) False prmt8b
XM_043236975.1 mRNA downstream 293142 5207074 ~ 5216162 (-) True LOC122342835
XM_043236196.1 mRNA upstream 30522 5540289 ~ 5549648 (-) True podxl
XM_043236799.1 mRNA upstream 65890 5575657 ~ 5578580 (-) True LOC122342741
XM_043236302.1 mRNA upstream 70735 5580502 ~ 5711019 (-) False btbd11a
XM_043236300.1 mRNA upstream 70735 5580502 ~ 5700741 (-) True btbd11a
XM_043236301.1 mRNA upstream 70735 5580502 ~ 5700740 (-) False btbd11a
unassigned_transcript_303 other downstream 744137 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 744364 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 751477 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 1241809 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1905034 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 207279 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 209245 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 220251 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 220251 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 220251 5730018 ~ 5736946 (-) False G26408

Expression Profile