RNA id: TU39044


Basic Information

Item Value
RNA id TU39044
length 417
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G26324
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5513556 ~ 5513972 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAGACTTCATTGATTTGTTTCGCTCTTTTTGGCTTGTTTACTTTGCATCAGGGGCATGCAGATGACAAAGAgaggaaggagaaagagagaggggatgGTTTTAAATATGGGATGAGGGTAGCTTTCCTCTGGCTGAAATGACCCAGTGGAATTGACCTGATTTTCACTCACCCCAAAAGGCTTTGGATTCCAACTAGACAAACACCCTGCCTGGGTCCTTTCATTAGTCGGAAAACAAGTCGATACTGTACCGCCAAGGAAGTTTCTACAACAATAATCTCTGCtcaccaacaaaacaaaaccaaaaaagtctGTAAAGGGAATGTCTGCAGCAGaacaattattttcaacatttaccGGAATCATTTCAGTCCAGTCCAAAAGAAAGAATCCAGCAAAAAATAATTCCTCCCTAC

Function

GO:

id name namespace
GO:0004520 endodeoxyribonuclease activity molecular_function
GO:0004536 deoxyribonuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39038 lncRNA upstream 3761 5509303 ~ 5509795 (+) True G26318
TU39034 lncRNA upstream 8184 5505072 ~ 5505372 (+) True G26314
TU38876 lncRNA upstream 308251 5204113 ~ 5205305 (+) True G26196
TU38828 lncRNA upstream 390802 5122473 ~ 5122754 (+) True G26156
TU38827 lncRNA upstream 395314 5117982 ~ 5118242 (+) True G26155
TU39045 lncRNA downstream 380 5514352 ~ 5514581 (+) True G26325
TU39053 lncRNA downstream 4961 5518933 ~ 5519157 (+) True G26333
TU39054 lncRNA downstream 5502 5519474 ~ 5519856 (+) True G26334
TU39062 lncRNA downstream 39414 5553386 ~ 5553781 (+) True G26340
TU39059 lncRNA downstream 49399 5563371 ~ 5571208 (+) True G26337
XM_043236456.1 mRNA upstream 95569 5412647 ~ 5417987 (+) True asb13a.2
XM_043236455.1 mRNA upstream 100992 5410196 ~ 5412564 (+) True asb13a.1
XM_043236453.1 mRNA upstream 103514 5401464 ~ 5410042 (+) True gdi2
XM_043236454.1 mRNA upstream 112643 5398333 ~ 5400913 (+) True ankrd16
XM_043236676.1 mRNA upstream 115670 5354343 ~ 5397886 (+) False pcloa
XM_043236195.1 mRNA downstream 7781 5521753 ~ 5540119 (+) True mkln1
XM_043236303.1 mRNA downstream 190509 5704481 ~ 5715620 (+) True cry1a
XM_043236305.1 mRNA downstream 205037 5719009 ~ 5720254 (+) True tnnt2c
XM_043236287.1 mRNA downstream 336516 5850488 ~ 5862313 (+) True LOC122342465
XM_043236976.1 mRNA downstream 348635 5862607 ~ 5898827 (+) True LOC122342837
unassigned_transcript_304 other upstream 114589 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 121930 5354332 ~ 5391626 (+) False pcloa
TU38659 other upstream 570821 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 570821 4935929 ~ 4942735 (+) False LOC122343397
TU38544 other upstream 884657 4550163 ~ 4628899 (+) True G25958
TU39144 other downstream 267972 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 336457 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 379013 5892985 ~ 5897771 (+) False LOC122342837
TU39399 other downstream 874865 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1711549 7225521 ~ 7227437 (+) True G26692

Expression Profile