RNA id: TU39045


Basic Information

Item Value
RNA id TU39045
length 230
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G26325
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5514352 ~ 5514581 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caaacacactcagaccTCACTCTTGATAGATGAGGTTTTGAGTAGGGCAGAACACAGTGCCCGTGGAGAGTTGCTCTTTGTCAATGGCATCCCGAGTGAGATATGAGTTCACATTAGGCAGCGGAGGTCTCGGGTAGGGGCCTTGCCAGCTTTGCTTGCCCGGGCGCATTCCTCTCCCATTCAGCACTTTGGGAACCGGGAACTCGGGACACAAATATCGGCCATCGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39044 lncRNA upstream 380 5513556 ~ 5513972 (+) True G26324
TU39038 lncRNA upstream 4557 5509303 ~ 5509795 (+) True G26318
TU39034 lncRNA upstream 8980 5505072 ~ 5505372 (+) True G26314
TU38876 lncRNA upstream 309047 5204113 ~ 5205305 (+) True G26196
TU38828 lncRNA upstream 391598 5122473 ~ 5122754 (+) True G26156
TU39053 lncRNA downstream 4352 5518933 ~ 5519157 (+) True G26333
TU39054 lncRNA downstream 4893 5519474 ~ 5519856 (+) True G26334
TU39062 lncRNA downstream 38805 5553386 ~ 5553781 (+) True G26340
TU39059 lncRNA downstream 48790 5563371 ~ 5571208 (+) True G26337
TU39064 lncRNA downstream 58922 5573503 ~ 5573719 (+) True G26342
XM_043236456.1 mRNA upstream 96365 5412647 ~ 5417987 (+) True asb13a.2
XM_043236455.1 mRNA upstream 101788 5410196 ~ 5412564 (+) True asb13a.1
XM_043236453.1 mRNA upstream 104310 5401464 ~ 5410042 (+) True gdi2
XM_043236454.1 mRNA upstream 113439 5398333 ~ 5400913 (+) True ankrd16
XM_043236676.1 mRNA upstream 116466 5354343 ~ 5397886 (+) False pcloa
XM_043236195.1 mRNA downstream 7172 5521753 ~ 5540119 (+) True mkln1
XM_043236303.1 mRNA downstream 189900 5704481 ~ 5715620 (+) True cry1a
XM_043236305.1 mRNA downstream 204428 5719009 ~ 5720254 (+) True tnnt2c
XM_043236287.1 mRNA downstream 335907 5850488 ~ 5862313 (+) True LOC122342465
XM_043236976.1 mRNA downstream 348026 5862607 ~ 5898827 (+) True LOC122342837
unassigned_transcript_304 other upstream 115385 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 122726 5354332 ~ 5391626 (+) False pcloa
TU38659 other upstream 571617 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 571617 4935929 ~ 4942735 (+) False LOC122343397
TU38544 other upstream 885453 4550163 ~ 4628899 (+) True G25958
TU39144 other downstream 267363 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 335848 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 378404 5892985 ~ 5897771 (+) False LOC122342837
TU39399 other downstream 874256 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1710940 7225521 ~ 7227437 (+) True G26692

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000020_05569133_05573180.mRNA True 1641 mRNA 0.41 2 CI01000020 5568383 ~ 5573807 (+)