RNA id: TU39059


Basic Information

Item Value
RNA id TU39059
length 624
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G26337
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5563371 ~ 5571208 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcagaaatgcttttttggCCCCGCAGACAAATTATATGAGATGCAAACAGGTCATAAATTGgacatttattttcactctttaaatacattatttattgtatggAATCATGCACAACAATGCAACAAAGGCACTTAATAATGGAAAGATTCAAAATTCTtttctcttgctttttttttttttttttttttgctttgaatattTCAAAGTTTCTTAATCCTGGTCCTGCACTTTTGTTGAAAGACAAACGAAATATGCACTGTGATGAGGCTCAAGATAACATTGAAATAACCCTCAGAAGTGCCCTAACCAAGTTGAGTAGCTCAGGAAGTAAAGAGATGTGTTTTCATCTGTGAGACCTGAGTTTGAATCCCACTGTGGGTTTAATAAATGCTTGAGCTGAACATATCATTGAAATCACAGTCATTCTTATAGGACTAAAACTCAACGGAGCAGAAAGTAAagtgttgtgcttttttttttttaaatcacacacacagtaatagattCAGTGGCTCAGGAGGTCTTGGAGACCTGAGTTCGAATCCCGCTGTTTCTTCTGTTAAGTAGTAgtttaaataaacagtgaaatatAAGAGAGAGCACGCGTTGATGCAAGAGATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39062 lncRNA upstream 9590 5553386 ~ 5553781 (+) True G26340
TU39054 lncRNA upstream 43515 5519474 ~ 5519856 (+) True G26334
TU39053 lncRNA upstream 44214 5518933 ~ 5519157 (+) True G26333
TU39045 lncRNA upstream 48790 5514352 ~ 5514581 (+) True G26325
TU39044 lncRNA upstream 49399 5513556 ~ 5513972 (+) True G26324
TU39064 lncRNA downstream 2295 5573503 ~ 5573719 (+) True G26342
TU39128 lncRNA downstream 155858 5727066 ~ 5727271 (+) True G26387
TU39129 lncRNA downstream 156997 5728205 ~ 5736908 (+) False G26388
TU39130 lncRNA downstream 156997 5728205 ~ 5736908 (+) True G26388
TU39131 lncRNA downstream 156997 5728205 ~ 5733645 (+) False G26388
XM_043236195.1 mRNA upstream 23252 5521753 ~ 5540119 (+) True mkln1
XM_043236456.1 mRNA upstream 145384 5412647 ~ 5417987 (+) True asb13a.2
XM_043236455.1 mRNA upstream 150807 5410196 ~ 5412564 (+) True asb13a.1
XM_043236453.1 mRNA upstream 153329 5401464 ~ 5410042 (+) True gdi2
XM_043236454.1 mRNA upstream 162458 5398333 ~ 5400913 (+) True ankrd16
XM_043236303.1 mRNA downstream 133273 5704481 ~ 5715620 (+) True cry1a
XM_043236305.1 mRNA downstream 147801 5719009 ~ 5720254 (+) True tnnt2c
XM_043236287.1 mRNA downstream 279280 5850488 ~ 5862313 (+) True LOC122342465
XM_043236976.1 mRNA downstream 291399 5862607 ~ 5898827 (+) True LOC122342837
XM_043236202.1 mRNA downstream 301451 5872659 ~ 5876129 (+) True LOC122342429
unassigned_transcript_304 other upstream 164404 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 171745 5354332 ~ 5391626 (+) False pcloa
TU38659 other upstream 620636 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 620636 4935929 ~ 4942735 (+) False LOC122343397
TU38544 other upstream 934472 4550163 ~ 4628899 (+) True G25958
TU39144 other downstream 210736 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 279221 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 321777 5892985 ~ 5897771 (+) False LOC122342837
TU39399 other downstream 817629 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1654313 7225521 ~ 7227437 (+) True G26692

Expression Profile