RNA id: TU39062


Basic Information

Item Value
RNA id TU39062
length 396
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G26340
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5553386 ~ 5553781 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTCAACACTATATGTAAGATATTGGTTATTGTGGAATCTATGTGTGTGCGAGTGTATGTATAAAACACCTGATTTAgtactttaatactttatttaattcatttctaatttaatttttaaatgatataacgATTTCTCCATCCAAAGGCACTAACATAggctaatatataatattaatattatactcTTCCTGGCAGATTTGTAACATCTTTAATTATTGCTCTGATGGGGAAAATTTTCATTGCTTTAGCTCTTTTCTGCCttcgttttctattttataaaaaaacaacacatcagAACTACATTCTTTGGTCTTACACCTtgtaaaagcaaagaaaaaaatactatgtgAATTTggccacaaatatatattcctGTCACTGCCTGACATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39054 lncRNA upstream 33530 5519474 ~ 5519856 (+) True G26334
TU39053 lncRNA upstream 34229 5518933 ~ 5519157 (+) True G26333
TU39045 lncRNA upstream 38805 5514352 ~ 5514581 (+) True G26325
TU39044 lncRNA upstream 39414 5513556 ~ 5513972 (+) True G26324
TU39038 lncRNA upstream 43591 5509303 ~ 5509795 (+) True G26318
TU39059 lncRNA downstream 9590 5563371 ~ 5571208 (+) True G26337
TU39064 lncRNA downstream 19722 5573503 ~ 5573719 (+) True G26342
TU39128 lncRNA downstream 173285 5727066 ~ 5727271 (+) True G26387
TU39129 lncRNA downstream 174424 5728205 ~ 5736908 (+) False G26388
TU39130 lncRNA downstream 174424 5728205 ~ 5736908 (+) True G26388
XM_043236195.1 mRNA upstream 13267 5521753 ~ 5540119 (+) True mkln1
XM_043236456.1 mRNA upstream 135399 5412647 ~ 5417987 (+) True asb13a.2
XM_043236455.1 mRNA upstream 140822 5410196 ~ 5412564 (+) True asb13a.1
XM_043236453.1 mRNA upstream 143344 5401464 ~ 5410042 (+) True gdi2
XM_043236454.1 mRNA upstream 152473 5398333 ~ 5400913 (+) True ankrd16
XM_043236303.1 mRNA downstream 150700 5704481 ~ 5715620 (+) True cry1a
XM_043236305.1 mRNA downstream 165228 5719009 ~ 5720254 (+) True tnnt2c
XM_043236287.1 mRNA downstream 296707 5850488 ~ 5862313 (+) True LOC122342465
XM_043236976.1 mRNA downstream 308826 5862607 ~ 5898827 (+) True LOC122342837
XM_043236202.1 mRNA downstream 318878 5872659 ~ 5876129 (+) True LOC122342429
unassigned_transcript_304 other upstream 154419 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 161760 5354332 ~ 5391626 (+) False pcloa
TU38659 other upstream 610651 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 610651 4935929 ~ 4942735 (+) False LOC122343397
TU38544 other upstream 924487 4550163 ~ 4628899 (+) True G25958
TU39144 other downstream 228163 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 296648 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 339204 5892985 ~ 5897771 (+) False LOC122342837
TU39399 other downstream 835056 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1671740 7225521 ~ 7227437 (+) True G26692

Expression Profile