RNA id: TU39096


Basic Information

Item Value
RNA id TU39096
length 394
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G26359
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5555142 ~ 5569372 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGCGGCAGCAGTGCGCTTCACATTAGTCCAGATTGACAACTTGAGTTTGTTTAACAGAAGAAGAAACTTCAGTCGACGCACGACACGTCCATATGTGGGATTCTTGAACTGTGCTGTTGCCCTCAACTCCCTGACCTTTGGTTATTCAGACAAACAGGATAAGAGATGTGTTTGGACCACACAGAGCTCTGGACAGACGTTTGCTGTAGTGATGGACATCTGCTCATGGACAGGTAAGAGAGCTTGTGTTTGTGATATGTGCTCTAGGTtaccatcattttctttttggggggTCACTCCTCTagaaagcaaatgatggtaACCTAAGCGGGTGGGGAAGGGACGGCGGCCCCAATTTTTTATACagcaaaattcattttttattaaaccaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39086 lncRNA downstream 10263 5555142 ~ 5557854 (-) False G26359
TU39068 lncRNA downstream 48778 5519103 ~ 5519339 (-) False LOC122343358
TU39040 lncRNA downstream 57858 5509992 ~ 5510259 (-) True G26320
TU39039 lncRNA downstream 58350 5509304 ~ 5509767 (-) True G26319
TU39037 lncRNA downstream 59016 5508871 ~ 5509101 (-) True G26317
TU39098 lncRNA upstream 1172 5570544 ~ 5573432 (-) True G26361
TU39155 lncRNA upstream 135117 5704489 ~ 5710206 (-) True G26398
XR_006250579.1 lncRNA upstream 145767 5715139 ~ 5716435 (-) True LOC122342480
TU39168 lncRNA upstream 158685 5728057 ~ 5728729 (-) True G26407
TU39263 lncRNA upstream 337383 5906755 ~ 5913538 (-) False G26462
XM_043236196.1 mRNA downstream 18469 5540289 ~ 5549648 (-) True podxl
XM_043237090.1 mRNA downstream 91935 5454172 ~ 5476182 (-) True net1
XM_043237091.1 mRNA downstream 106896 5454172 ~ 5461221 (-) False net1
XM_043237942.1 mRNA downstream 333061 5224238 ~ 5235056 (-) True prmt8b
XM_043236799.1 mRNA upstream 6285 5575657 ~ 5578580 (-) True LOC122342741
XM_043236302.1 mRNA upstream 11130 5580502 ~ 5711019 (-) False btbd11a
XM_043236300.1 mRNA upstream 11130 5580502 ~ 5700741 (-) True btbd11a
XM_043236301.1 mRNA upstream 11130 5580502 ~ 5700740 (-) False btbd11a
XM_043237925.1 mRNA upstream 151044 5720416 ~ 5724961 (-) True si:dkey-222f8.3
unassigned_transcript_303 other downstream 802950 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 803177 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 810290 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 1300622 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1963847 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 147674 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 149640 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 160646 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 160646 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 160646 5730018 ~ 5736946 (-) False G26408

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058060 True 985 lncRNA 0.45 2 NC_007115.7 7650010 ~ 7653168 (-)