RNA id: XM_043236287.1


Basic Information

Item Value
RNA id XM_043236287.1
length 2512
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC122342465
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5781944 ~ 5862313 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAACGTGGAGGTGCGATACTTGTGTGGGAGGCACTAATTCAGCTACTGATATCGCTCCAGTTCCGCGCTCGCTGCGCTCGAGTTCAGTCAGCAGTCTTTCAACTCCAACTTTCAGCGCGATCCAGACGCACTTGACTGACCGCGACGCCACGGACTGGACAGCTGGGCTCAGATGACACGTtaagaactgaaaaaaagaatggaCCGATCTGTTAAAGCGAAATAAAAGATGCATCCTAGCGTGTCAGTGCCAGCGTATAGCGCGGGGATGCGCAGCGGCAGGTGATGTGGATGCTGACGAGCCGGGGCTCAACTGGTCTCCAAGTGGCTCTTAGAACCTGTGGAAGAACTTTTGCACGGCTGGCTTTCAGTAGGAGTCGAAATCATGGAGTTGAGGGACCGTCCAAGAAGTCTTTATGACAATTTCGGTATTAGTTTCCATTTAggcatttattgtttattaaacacTGCTGCGCGAATCAACAAATGGCTCGCTTTAACGCGCTAATCTAGTATTGCTTATTGCGGCACGTTTTAAAACTTTTCCGGCACGTTTAGTGACAGCACTTGTTCTTATCGAGTTAATCCGGATCCCGTTGGCTCGTATGGGACTGAGGCACTCATCGCGGTGCCTGCTCCTGCGGAGAAAGatggcggaggcggagagctcGGAGCAGCGCCAGCAGCAGCGTATTTCCAATGCGCCCTCGTCCCAGTCCTTGCAACCATCTCCGCTACCGAAGCCAGTGACATCTGTTCATCATGTTCCTCACCCCCCACACACGCCACACGTCTCCTCGCTTTCTGCCTGTCCCGGCCGAGGCAAGATGGCCAAGCTACTAAACCCGGAGGAGATGACATCACGAGACTACTACTTTGACTCCTACGCCCACTTTGGGATCCACGAGGAGATGCTGAAGGATGAGGTGAGGACGCTGACGTATAGGAACTCCATGTACCACAATAAACACATCTTTAAAGATAAGATAGTTCTAGACGTGGGCAGCGGAACCGGAATCCTCTCCATGTTTGCTGCCAAAGCAGGAGCCAAGCATGTATACGGGATCGAATGCTCAAGCATATCAGAATACTCTGAGAAAATCATCAAGGCCAATCACCTGGACAGTGTTATAACCATCTTTAAAGGGAAAGTGGAAGAGACAGAGCTGCCGGTAGATCAGGTGGACATTATCATCTCAGAGTGGATGGGTTATTGCCTTTTTTATGAGTCCATGCTCAACACGGTCATCTACGCCAGAGATAAATGGCTGAAACCCGGAGGTCTGATGTTCCCAGACAGGGCTGCTCTGTACGTGGTGGCCATTGAAGACAGGCAGTACAAGGACTTCAAGATTCACTGGTGGGAGAACGTTTATGGTTTTGACATGACCTGCATCAGAAACGTAGCTATGAAAGAACCACTGGTGGACATCGTGGACTCAAAGCAAGTGGTATCCAACGCATGCCTGATCAAGGAAGTGGACATCTACACGGTGAAGCCAGAGGAGCTGTCCTTCACCTCCTCCTTCTGTCTGCAGGTCCAGAGGAACGATTACGTCCACGCTCTGGTCACCTACTTCAATATTGAATTCACCAAGTGTCATAAAAAGACTGGCTTCTCCACAGCACCAGACGCCCCGTACACACACTGGAAGCAGACAGTGTTTTATCTGGAGGAATATCTGACTGTGAAAAGAGGAGAGGAGATAGTCGGCACCGTCAGCATGAAGCCAAACGAGAAGAACGCACGTGATCTGGATTTTACCTTCGAGCTGGATTTTAAAGGTCAGCTATGCGAGGCCGCTATCGCTCACGACTACAAGATGCGCTAAGTGTCCAGCAGCGGCGAGAGACGGTTCGTGACGGCACTCAGAGAAGCAGAGGCAGGGGCCGCCCCGGATCACGGCTACAGCCCTGCTGCTGGAAAAAGACGGAAACGGAGAGAAAGACCAGCACACAAGTTGTTATCTCTGGGAGTCTTGCCAACGTTTTTGGAGCGGGGTGGCACTTCTAGCAATAGCGGCCTTGCCTTCGCCGACTCTAGCCTGCACTAGTACGCCATCTCTCCGACCCGACTGTTCTGGGGCCAGCTGACTACACCCCGCTGCAAACAAAAGAATGTCATGCTCTTATGAATGTTAAGTGTTAGTGTACGGTTACTTTGCTTTTGCATTAGGAGCGTGGGATGAGATAATTACTATTGAAGGTTGTGCTTCCACGTCCCAGGCATTAAAATATCTCAGTTTAATATTAGATTGTGATAATTCATTTGCTGGACTTTTCAAACTATTTCTCAATGCAGTAAAGTAAGAGATATCATAGATTTAAATCAGGTTTTAACGAAACCCAggtcattttcagaaaatagtactttttattttgcgcTAAAAATAATTCACTGCTTACTTAAATATCATCGGCCAACGCTAAGAACAATAGgttattttttctgtaaagcattaataatgtttttttgtgtgtggtttttttgttGGCAAATACAACTGATGC

Function

GO:

id name namespace
GO:0006479 protein methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008276 protein methyltransferase activity molecular_function

KEGG:

id description
K11439 PRMT8; type I protein arginine methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39138 lncRNA upstream 103994 5731374 ~ 5746494 (+) False G26388
TU39129 lncRNA upstream 113580 5728205 ~ 5736908 (+) False G26388
TU39130 lncRNA upstream 113580 5728205 ~ 5736908 (+) True G26388
XR_006250580.1 lncRNA upstream 113984 5734592 ~ 5736504 (+) True LOC122342489
TU39131 lncRNA upstream 116843 5728205 ~ 5733645 (+) False G26388
TU39192 lncRNA downstream 42341 5904654 ~ 5913153 (+) False LOC122342716
TU39193 lncRNA downstream 45554 5907867 ~ 5913153 (+) False LOC122342716
TU39197 lncRNA downstream 45554 5907867 ~ 5913153 (+) False LOC122342716
TU39199 lncRNA downstream 47067 5909380 ~ 5913514 (+) True G26422
XR_006250635.1 lncRNA downstream 48761 5911074 ~ 5913161 (+) True LOC122342716
XM_043236305.1 mRNA upstream 130234 5719009 ~ 5720254 (+) True tnnt2c
XM_043236303.1 mRNA upstream 134868 5704481 ~ 5715620 (+) True cry1a
XM_043236195.1 mRNA upstream 310369 5521753 ~ 5540119 (+) True mkln1
XM_043236456.1 mRNA upstream 432501 5412647 ~ 5417987 (+) True asb13a.2
XM_043236455.1 mRNA upstream 437924 5410196 ~ 5412564 (+) True asb13a.1
XM_043236976.1 mRNA downstream 294 5862607 ~ 5898827 (+) True LOC122342837
XM_043236202.1 mRNA downstream 10346 5872659 ~ 5876129 (+) True LOC122342429
XM_043236201.1 mRNA downstream 15221 5877534 ~ 5881277 (+) True LOC122342428
XM_043237912.1 mRNA downstream 79513 5941826 ~ 6015837 (+) True tmem178b
XM_043236355.1 mRNA downstream 182570 6044883 ~ 6054197 (+) True mkrn1
unassigned_transcript_304 other upstream 451521 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 458862 5354332 ~ 5391626 (+) False pcloa
TU38659 other upstream 907753 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 907753 4935929 ~ 4942735 (+) False LOC122343397
TU38544 other upstream 1221589 4550163 ~ 4628899 (+) True G25958
TU39185 other downstream 30672 5892985 ~ 5897771 (+) False LOC122342837
TU39399 other downstream 526524 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1363208 7225521 ~ 7227437 (+) True G26692
XR_006250877.1 other downstream 1507822 7370135 ~ 7370275 (+) True LOC122343893
XR_006250876.1 other downstream 1511541 7373854 ~ 7373994 (+) True LOC122343892

Expression Profile