RNA id: TU39171


Basic Information

Item Value
RNA id TU39171
length 512
RNA type TUCP
GC content 0.41
exon number 2
gene id G26408
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5730018 ~ 5736946 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggcggttatttgaaacattgccCGTGGACACTTAATCATGCCTGTAGAACAACAGAATTTAGACTGCTGGTGACCAAATTCGAAACGTTTGCACATTCAAATGATCTCtcatccgaaaaaaaaaaaaaataaataaaatgaaataaaataaaataaaatacaaaaatgaaaaaaataagaacacgCATACGCAACCTCGGTAGATTCAGATTGATTTCTCAGTCTAGAGTTAATTTAGTGCCACTGTCCCGTCACTGTGACGCGGAGGTCGCAGCATCCTCCTGTGGTCTCAAAGAGAACTGCAGTAGAATGTCCCACGGCTCTGCGACAGAGAAGATTCAAACGATTCCACAGCTTGTGcatgatgtgctgctttcagctgtccTGGACGAGGTCATAGCATCCCCTGGAAATCACTTGACGCTTGTCTTCTTCCTttcgcaaaagacaaaacagatccacTTTAATGTACTTCAGTCTGAACACGAAAAAGGAAGGTTggcatcattgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39168 lncRNA downstream 1289 5728057 ~ 5728729 (-) True G26407
XR_006250579.1 lncRNA downstream 13583 5715139 ~ 5716435 (-) True LOC122342480
TU39155 lncRNA downstream 19812 5704489 ~ 5710206 (-) True G26398
TU39098 lncRNA downstream 156586 5570544 ~ 5573432 (-) True G26361
TU39096 lncRNA downstream 160646 5568117 ~ 5569372 (-) False G26359
TU39263 lncRNA upstream 169809 5906755 ~ 5913538 (-) False G26462
TU39264 lncRNA upstream 176707 5913653 ~ 5914700 (-) True G26463
TU39265 lncRNA upstream 180325 5917271 ~ 5917890 (-) True G26464
TU39273 lncRNA upstream 206693 5943639 ~ 6017691 (-) False G26469
TU39279 lncRNA upstream 276634 6013580 ~ 6017691 (-) True G26469
XM_043237925.1 mRNA downstream 5057 5720416 ~ 5724961 (-) True si:dkey-222f8.3
XM_043237926.1 mRNA downstream 5112 5720416 ~ 5724906 (-) False si:dkey-222f8.3
XM_043236302.1 mRNA downstream 18999 5580502 ~ 5711019 (-) False btbd11a
XM_043236300.1 mRNA downstream 29277 5580502 ~ 5700741 (-) True btbd11a
XM_043236301.1 mRNA downstream 29278 5580502 ~ 5700740 (-) False btbd11a
XM_043236751.1 mRNA upstream 183699 5920645 ~ 5937372 (-) True braf
XM_043236752.1 mRNA upstream 183699 5920645 ~ 5937367 (-) False braf
XM_043236019.1 mRNA upstream 201732 5938678 ~ 5940015 (-) False mrps33
XM_043237027.1 mRNA upstream 283223 6020169 ~ 6039771 (-) True cnot4b
XM_043236354.1 mRNA upstream 322305 6059251 ~ 6064160 (-) True il17ra1a
TU39166 other downstream 9768 5719012 ~ 5720250 (-) True G26405
unassigned_transcript_305 other downstream 12885 5717046 ~ 5717133 (-) True trnay-gua_3
unassigned_transcript_303 other downstream 964851 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 965078 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 972191 4731224 ~ 4757827 (-) False LOC122343492
TU39180 other upstream 113458 5850404 ~ 5853366 (-) True G26414
TU39262 other upstream 172527 5909473 ~ 5913538 (-) True G26462
TU39270 other upstream 201109 5938055 ~ 5939999 (-) True mrps33
TU39610 other upstream 613557 6350503 ~ 6361443 (-) True msrb3
TU39663 other upstream 1000695 6737641 ~ 6739595 (-) False il22

Expression Profile