RNA id: XM_043236976.1


Basic Information

Item Value
RNA id XM_043236976.1
length 2906
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC122342837
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5862607 ~ 5898827 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGGCTTTGATCGCTACTTCACCAGCCGCACACTCGAGAACAACCGGAGGAATATCTGGTTTGCGGAGTTCTGGGAGAACAATTTCAACTGCAAGCTCAGCCGCCATGCCTTGAAGAAGGGATCCGGCATTAAGAAATGCACAAATCAAGAGAGGATCGGAAAAGACTCGTCCTACGAGCAAGAAGGAAAGGTGATGTTCGTGATTGATGCAGTATATGCGATGGCGCACGCCCTCCACAACATGCACAAAGAACTCTGCCCTGGCAAAGTGGGACTCTGTTCCAAAATGGACCCAGTTGACGGAACCCTCCTACTAAAGTACATCCGCAACGTCAAGATAGCAGGCATTGCAGGCAGTCCGGTGCAGTTCAATGAGAATGGAGATGCCCCAGGCCGTTACGATATCTACCAGTACCAGATAAAGAACAAAACAGCTGAATACAAGACCATAGGCCACTGGACTGACCAACTTTACCTGAATATGCGGGCGTTGCAGTGGCCAGGTGGAGGGAAGCAGGTGCCGACTTCCATTTGCAGTCAGCCCTGCAAACCCGGGTGGCGCAAGAAGATCGTTAAGGGCATTTCCTGCTGCTGGCACTGCGAGCGCTGCGATGGTTACCAGTATCAGTACGACCTTTACACCTGCAAGATGTGCCGCTTTGATTTAAGACCTAACAAAAATCACACAGGCTGCCAGCCCATTCCGATTGTAAAGCTGGAGTGGAGCTCGCCCTGGGCAGTCATACCGGTCCTCATCGCTATTCTCGGCATCATAGCCACTCTTTTTGTTGTGGTCACCTTCATTCGCTACAACGACACTCCGATCGTCAAAGCATCCGGACGTGAGCTCAGTTACGTCCTGCTTACAGGAATCTTTTTGTGTTACGCCACCACCTTCCTGATGATCTCGACCCCAGACGTGGGGATCTGTTCGCTCAGGAGAATTTTCCTGGGGCTCGGAATGAGCATCAGCTATGCGGCGCTGCTCACCAAAACCAATCGGATTTATCGGATTTTCGAGCAGGGGAAAATGACAGTGAGCGCGCCACGCTTTATCAGTCCGGCGTCGCAGTTGGTAATCACCTTCAGCTTGATTTCCGTTCAGCTCCTAGGGGTGTGCATCTGGTTCGCAGTGGACCCTTCCCAAGCTCTCATTGACTACGAGGACCAACGCACGGCAGATCCCGAGATGGCACGCGGGGTCCTAAAGTGCGACATTTCGGACTTGTCCCTCATCTGCCTCCTGGGATACAGCATGTTGCTGATGGTGACGTGCACAGTTTACGCCATTAAGACGCGAGGGGTGCCAGAGACCTTCAACGAGGCCAAGCCCATAGGCTTCACCATGTACACCACCTGCATCATTTGGCTTGCTTTCATCCCCATTTTCTTCGGGACGTCACAGTCGACGGAAAAGATGTACATACAAACGACCACGCTGACCATCTCGGTGAGTCTGAGCGCGTCTGTGTCTCTGGGGATGCTCTACATGCCGAAGGTCTATGTGGTGCTCTTCCACCCGGAGCAGAATGTGGCCAAACGCAGCACTCGCAGCCTAAAAGCTGTGGTCACTGCCGCCACCATGTCTAACAAGTTCAACCCCAAGGCCAGCCTGCGGCCCAACGGAGAAGCCAAGTCGGAGCTGTGCGAGAACCTGGAAACTCAGGGTGAGCGGCTTTGACGATAAACACTTTATTGACActgatttttatattgcaataaacCTGTTATTATAATCTTAAAAACTTTAATTCATCATCATTCAATTGCTCGTTTAAACGGATCCGAATTTGAAGAGGGTCGCAAAATCGCGCCTCAGCAGTCTGGATGCTTTAGATTGATTTTTGTTCTAAATGCTCGATTCACCCAAAATCAACACATCTGCTATTATTTACTCCTCGATCACTGCAAACCAATataacattctttttttaaaatgtcattgagAGGATCATAACAAGACAACCCGCTAATCGTCTGGCTCACTGCACGCAAAGGTTATTTTGGTTTCATTATGTGTGAATCTAACTATTTGCCGTCAGATATGCGCTAGCTGGtgagttttttaaattatcaagagGCAAATCGGTTGAATCGGTACAGCAGTCCTTACTGAAACCCATCTCCTGCTAagttaaatatcaataaaacacagcagctgATAAACAAGCTTTGTAATACAGCAGTAAATAAAAGCCTGCTGCCTCAGCAGAAATAACTCACATTCTAGAACAGAAGCAAACCTATAGTCGTCCTGAAAGAGAAACGAAAGGAGTCATAGtttgcataaattatattattcattaagGCCACAATTTACCAAGATcccaaataaaatgtactaattGGCTTCTGCAGTCAATCAAATTTTGTGTAAGCATTATAGCTATACTAGgggtaaaaataacacaaatagtCGCACATGCACttgctttatttcaatttaagttTTACCTAAAAGTATTTGGTATTTTTGCACATGCAGATCAGTGATTTAAGTGGTAATATGACAACATATGTTACATTCAGATATGATTTTGTGCTCTTAATCTAATGTGGTATTAATTTGCACACCTTTTCTGAAGTTTTCAGAGGTGATAATTCATTTTGCAAGCACTGTTTAATTCATTTGCAATGACGTTGTCCTTTATTCTACATGCCCCGAATGGCATATTCATTAGGAGAAACCTGCGAAGAGGCGCTATCTTCAGGTTCTATATCTGGAATACAGAATCCTCAGTAGACACAGcagatttaaaaatctttattaatttatttttgcatgtgccatctggttttcatgttttttatatgcACAACAATTTAGTAAATCACAGACTAAAAGTTTGCTTCACTGTCAACATGAATGTAGTTAGACACTACAACAGTTTTGAGACAGCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39138 lncRNA upstream 116113 5731374 ~ 5746494 (+) False G26388
TU39130 lncRNA upstream 125699 5728205 ~ 5736908 (+) True G26388
TU39192 lncRNA downstream 5827 5904654 ~ 5913153 (+) False LOC122342716
TU39193 lncRNA downstream 9040 5907867 ~ 5913153 (+) False LOC122342716
TU39197 lncRNA downstream 9040 5907867 ~ 5913153 (+) False LOC122342716
TU39199 lncRNA downstream 10553 5909380 ~ 5913514 (+) True G26422
XR_006250635.1 lncRNA downstream 12247 5911074 ~ 5913161 (+) True LOC122342716
XM_043236287.1 mRNA upstream 294 5850488 ~ 5862313 (+) True LOC122342465
XM_043236305.1 mRNA upstream 142353 5719009 ~ 5720254 (+) True tnnt2c
XM_043236303.1 mRNA upstream 146987 5704481 ~ 5715620 (+) True cry1a
XM_043236195.1 mRNA upstream 322488 5521753 ~ 5540119 (+) True mkln1
XM_043236456.1 mRNA upstream 444620 5412647 ~ 5417987 (+) True asb13a.2
XM_043237912.1 mRNA downstream 42999 5941826 ~ 6015837 (+) True tmem178b
XM_043236355.1 mRNA downstream 146056 6044883 ~ 6054197 (+) True mkrn1
XM_043236356.1 mRNA downstream 156331 6055158 ~ 6059544 (+) True tmem121b
XM_043236369.1 mRNA downstream 294682 6193509 ~ 6234938 (+) False lmo3
XM_043236371.1 mRNA downstream 294683 6193510 ~ 6234938 (+) False lmo3
TU39144 other upstream 9226 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other upstream 9226 5850429 ~ 5853381 (+) False LOC122342465
unassigned_transcript_304 other upstream 463640 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 470981 5354332 ~ 5391626 (+) False pcloa
TU38659 other upstream 919872 4929471 ~ 4942735 (+) False LOC122343397
TU39399 other downstream 490010 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1326694 7225521 ~ 7227437 (+) True G26692
XR_006250877.1 other downstream 1471308 7370135 ~ 7370275 (+) True LOC122343893
XR_006250876.1 other downstream 1475027 7373854 ~ 7373994 (+) True LOC122343892
XR_006250663.1 other downstream 1634093 7532920 ~ 7558489 (+) False ube2h

Expression Profile