RNA id: TU39190



Basic Information


Item Value
RNA id TU39190
length 275
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id LOC122342716
representative False

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5904654 ~ 5913161 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


cctgggaagaaaacacaacagttCGCGTCAATAGTAAGAGAGGTGTTGAACAGAAGCAGAGCCCTGGAGCGTGAGGACAGACATTGACCGCAATGAAGGACGTGTGCTGAAGGACGGGAAGAAGACAAGCGTCAAGTGATTTCCAGGGGATGCTATGACCTCGTCCAggacagctgaaagcagcacatcatgCACAAGCTGTGGAATCGTTTGAATCTTCTCTGTCGCAGAGCCGTGGGACATTCTACTGCAGTTCTCTTTGAGACCACAGGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU39138 lncRNA upstream 164585 5731374 ~ 5746494 (+) False G26388
TU39130 lncRNA upstream 174171 5728205 ~ 5736908 (+) True G26388
XR_006250636.1 lncRNA downstream 1064 5914217 ~ 5916247 (+) True LOC122342717
XR_006250637.1 lncRNA downstream 4351 5917504 ~ 5922916 (+) True LOC122342718
TU39343 lncRNA downstream 303688 6216841 ~ 6297920 (+) False G26517
TU39345 lncRNA downstream 303688 6216841 ~ 6297920 (+) False G26517
TU39341 lncRNA downstream 382980 6296133 ~ 6297920 (+) False G26517
XM_043236976.1 mRNA upstream 12252 5862607 ~ 5898827 (+) True LOC122342837
XM_043236201.1 mRNA upstream 29802 5877534 ~ 5881277 (+) True LOC122342428
XM_043236202.1 mRNA upstream 34950 5872659 ~ 5876129 (+) True LOC122342429
XM_043236287.1 mRNA upstream 48766 5850488 ~ 5862313 (+) True LOC122342465
XM_043236305.1 mRNA upstream 190825 5719009 ~ 5720254 (+) True tnnt2c
XM_043237912.1 mRNA downstream 28673 5941826 ~ 6015837 (+) True tmem178b
XM_043236355.1 mRNA downstream 131730 6044883 ~ 6054197 (+) True mkrn1
XM_043236356.1 mRNA downstream 142005 6055158 ~ 6059544 (+) True tmem121b
XM_043236369.1 mRNA downstream 280356 6193509 ~ 6234938 (+) False lmo3
XM_043236371.1 mRNA downstream 280357 6193510 ~ 6234938 (+) False lmo3
TU39185 other upstream 13308 5892985 ~ 5897771 (+) False LOC122342837
TU39144 other upstream 57698 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other upstream 57698 5850429 ~ 5853381 (+) False LOC122342465
unassigned_transcript_304 other upstream 512112 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 519453 5354332 ~ 5391626 (+) False pcloa
TU39399 other downstream 475684 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1312368 7225521 ~ 7227437 (+) True G26692
XR_006250877.1 other downstream 1456982 7370135 ~ 7370275 (+) True LOC122343893
XR_006250876.1 other downstream 1460701 7373854 ~ 7373994 (+) True LOC122343892
XR_006250663.1 other downstream 1619767 7532920 ~ 7558489 (+) False ube2h