RNA id: TU39303



Basic Information


Item Value
RNA id TU39303
length 246
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G26487
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6077087 ~ 6077332 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CATCCATCCattcttataataataaactggCATGCCCTTTCACGTGcgttttttgttaacatttatttatgtaatttgttaTAATTGTTATCTGTTAAAGGGCACCTTTTATAcccttttttctgaaaatgtaatgtaagtCTCAGGTCTGTTGAAAATGAGTAtgtgaagtttcagctcaaaatacccCACATATCATTTAAACCGCTCTTTCACGTCGTCTTGCGCTTAAAAACACCAAACAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU39273 lncRNA downstream 59396 5943639 ~ 6017691 (-) False G26469
TU39279 lncRNA downstream 59396 6013580 ~ 6017691 (-) True G26469
TU39265 lncRNA downstream 159197 5917271 ~ 5917890 (-) True G26464
TU39264 lncRNA downstream 162387 5913653 ~ 5914700 (-) True G26463
TU39263 lncRNA downstream 163549 5906755 ~ 5913538 (-) False G26462
TU39306 lncRNA upstream 6258 6083590 ~ 6084210 (-) True G26490
TU39326 lncRNA upstream 83791 6161123 ~ 6163529 (-) False arhgef39
TU39371 lncRNA upstream 108757 6186089 ~ 6234938 (-) True G26541
TU39373 lncRNA upstream 116057 6193389 ~ 6207509 (-) False arhgef39
TU39377 lncRNA upstream 129842 6207174 ~ 6252648 (-) False arhgef39
XM_043236021.1 mRNA downstream 1455 6071904 ~ 6075632 (-) True rergla
XM_043236020.1 mRNA downstream 1466 6071904 ~ 6075621 (-) False rergla
XM_043236354.1 mRNA downstream 12927 6059251 ~ 6064160 (-) True il17ra1a
XM_043237027.1 mRNA downstream 37316 6020169 ~ 6039771 (-) True cnot4b
XM_043236019.1 mRNA downstream 137072 5938678 ~ 5940015 (-) False mrps33
XM_043236364.1 mRNA upstream 8560 6085892 ~ 6252630 (-) False arhgef39
XM_043236363.1 mRNA upstream 8560 6085892 ~ 6252630 (-) False arhgef39
XM_043236362.1 mRNA upstream 8560 6085892 ~ 6252630 (-) True arhgef39
XM_043236359.1 mRNA upstream 8560 6085892 ~ 6252630 (-) False arhgef39
XM_043236367.1 mRNA upstream 8560 6085892 ~ 6196295 (-) False arhgef39
TU39270 other downstream 137088 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 163549 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 223721 5850404 ~ 5853366 (-) True G26414
TU39171 other downstream 340141 5730018 ~ 5736946 (-) False G26408
TU39610 other upstream 273171 6350503 ~ 6361443 (-) True msrb3
TU39663 other upstream 660309 6737641 ~ 6739595 (-) False il22
TU39958 other upstream 1477783 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 2170579 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 2383174 8460506 ~ 8468028 (-) True G27232

Expression Profile