RNA id: TU39723


Basic Information

Item Value
RNA id TU39723
length 1787
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G26787
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6841974 ~ 6843849 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTCTTCTCCTGAGTAGCCCAGCACCACTTCTGGTCTGGGACCAGAGCCGTAGTCATTGACCGCCTGCACGGTGACTTCATAGGGTGCAAAAGTGGGCGTCCCTGGCACCACATATTGCGAGACATTGGCCAGCGTGAGTGAGGTCCATTGCTGATCCAGATCTTTGTGTCTCCAGCTCACCTTGTACTGTAGGCCTGGACCGTTCGACTCCAGCCCACTAAGCTCCTGCAAGTTATTGTCATACTGTCAGGTGACGTTCCTATGACTTCTACGTTTGCTGGATTCATGTCAGGCCCTGTGAGAATCACAATCAGACTtcaattcataaaaatacaaggACGTATAAAGATTCTTAAAGGAGcgtaacactttttttgaaaatagacccattttccaactcccctagagttaaacggTTGagttttttaatccattcagccaatctccaGGTCTGGTGGTAGCAcctttagctgtagcttagcatagaccaTTGAATATGATTAGACCTTtgagcattttatttacttgctaGGGTAACTCACGTGCAGGGTTGGTTCTGTActgtctggatgaagcgctgggTTTACTCAGACCCACTTCATTGAGAGCCAAGACCCTGAAGGAGTAATACACATACGGGGAAAGCTCCAGGTGTGCTGTGGTGCTGGTTCCTGAAACCTCAGTCATATTGACCCATACTCCAGGCTCGTGGAGCGAGTCTTCATATTGGATCAGGAACACTGAGGTAACCAAATGAATCAGAAAAGCAGACCTAAATGTTTCTGTTGTCCTATTATGTGGATCACCATTTCTACCACAAGGTAACAAACAAAGAACTCACACTGAATAGGACTATTGTTTTCATCACCAGGGGTCCATGTAAGCCGAACACTGCGCTCTCTTTGGTCTGTCAGCTCCAGGTCTGTGGGAGGGTCTGGTTGCTCTGGAAAACCAGATATTATGAGACACAAAACTCCATGCGGCTCAATTACACCAGACATTAGAAACATGCAACACgagccaaaacaaaaaaacaaaaaaaacttatataCCACCAACTTAAAGTCACAGACTGAAATGTGACATTCTGTTAAAGGCACAATTTTAAAGtatcagattttatttattttgcttcatgGAGAATTTGTGGAAAATgcatatgaatttgtatgatttttagaaataaataagcatGGAGGTGAAGGAGGTGAGCTGCCTCAAAACCAAAATTGCCTTTAACAGTTTATGTATCAATGGGAAACATCCACAAAGCACATTTATAAGCAAGCACATATTAGTATGGTGACAagggataaaaaaaagcaaaaatacaaatgcatcaAATGGTTTTGGAACCTGTTTGGGAACTGAAAGAAGTTCATTTTACCCATTATTATAGGTGGTGTTGGTGTGGCCTCTGACAAGGAAAGCAGGTTTGAGGAAGTCAAAAGTTAATTATACAAAAAGTATAAATTCACCTGTACAACAGCACCCGTGTAAAAATCCAGGAAGCCATATTATATAATGTACGGTTTCTGATAAAATGACTGCCTGAAGCAGGTGAGAGTGTATAAACTGTACCGACTACTGTGAGCATGGCGCTGGCTGAATCTTGGTCAAGGGTGGTGTTTCTGATGCAGGTGTAGTTGCCCTCGTCGTCCTCTCTCACATCATGTATAGTCAGACTATCAGAGCCCACCTCAAatctacacacaaacacacacacacacctgctagTCAAAACAAGTAGCTACAGCTAACTGAGACACTATCATGTTTTACACa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250660.1 lncRNA downstream 452773 6377116 ~ 6389201 (-) True LOC122342911
TU39386 lncRNA downstream 574560 6266832 ~ 6267414 (-) True G26556
TU39377 lncRNA downstream 589326 6207174 ~ 6252648 (-) False arhgef39
TU39371 lncRNA downstream 607036 6186089 ~ 6234938 (-) True G26541
TU39373 lncRNA downstream 634465 6193389 ~ 6207509 (-) False arhgef39
TU39728 lncRNA upstream 1710 6845559 ~ 6908495 (-) True G26790
TU39733 lncRNA upstream 16225 6860074 ~ 6862247 (-) True G26795
TU39736 lncRNA upstream 18874 6862723 ~ 6863382 (-) True G26796
TU39740 lncRNA upstream 40052 6883901 ~ 6956375 (-) True G26799
XR_006250751.1 lncRNA upstream 322957 7166806 ~ 7189549 (-) True LOC122343305
XM_043237094.1 mRNA downstream 48539 6792367 ~ 6793435 (-) True akap14
XM_043236394.1 mRNA downstream 57939 6776299 ~ 6784035 (-) True irf5
XM_043237696.1 mRNA downstream 83786 6756012 ~ 6758188 (-) True opn1sw1
XM_043237514.1 mRNA downstream 91724 6740893 ~ 6750250 (-) False mdm1
XM_043237512.1 mRNA downstream 91725 6740893 ~ 6750249 (-) True mdm1
XM_043236564.1 mRNA upstream 90244 6934093 ~ 6940296 (-) False gxylt1b
XM_043236563.1 mRNA upstream 90244 6934093 ~ 6940296 (-) True gxylt1b
XM_043236565.1 mRNA upstream 90737 6934586 ~ 6940296 (-) False gxylt1b
XM_043236566.1 mRNA upstream 96597 6940446 ~ 6950897 (-) True yaf2
XM_043236513.1 mRNA upstream 108043 6951892 ~ 6954640 (-) True zcrb1
TU39663 other downstream 102379 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 480531 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 901975 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 928436 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 988608 5850404 ~ 5853366 (-) True G26414
TU39958 other upstream 711266 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 1404062 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 1616657 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 2050335 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 2051943 8895792 ~ 8941271 (-) False LOC122343470

Expression Profile