RNA id: TU39733



Basic Information


Item Value
RNA id TU39733
length 1087
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G26795
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6860074 ~ 6862247 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAAGCCTTGGTGAGTAGACCACCGATATAAGACTCGAGGGTCCTTCTCCTTTGTTATTGTAGGTGCTCACTTTGACCTGTATCTCAGTGTCCGGGGTCATGCTGTCTTTGTAGACGTAGCGTCTAGTCTCTGGATCCTCCACAGTCGACCATTTCCATTCATAATCCTCATGCTGCTTGAACGCCACGACGTAGCCAAATTTTTTACCGAAGAAGAACTGAGGCTTTACAGGCTGCAGTGGAATTAAGAACACGCGAGATATCAGAAAGCTGCCTGAACGACAAACATAAATACAGTAGCATATGAACACATACACTCCAGGTCACGATGAGCTCTCCGCTTATTCCCACTTGCCCAATGACCTCAAAAGGAGCGACTGTAGGCCCTGAGACAAGAGAAACGCTGGGTGAGGATGTACACCTGCTTCACGGCTGTCATGTGGTTTTATGTACAAAACAGTGGTTTTtagaagaaatattatatatatatatatacacacatatatttattcattgaatacctattttattaatgtaattgaaatgaaacgttaattttatttaaaaacactgaaaactgtgcttttttttattaactcaCTGGCGTCCCATGTCTTGATTTTGATGGATGGACGGCTGTTTTCTCCTGCTCCAAATTCATTGATGGCATGCACTCTGAATTCATACTGCATCCAGGGGTAAAGGTCAACTATGGGCGGTGGTGTTGTCCACTATAGTCTGAGCGGTGCAGGAATAGCGTCCTGCGTGCCTCACCTGAATGTTCTTCATCAGCAGGTCTCCACTGTTCTCCAGAccctgcaaaacacacacacacacacacacacacacacacacacatacataatgaAACGTCTTGTATTCCTGAGAACAGCTAACCTGAGGTGCCGGCTTCTAGTCACCATGAGCAGCTCGTAGTGTTCGAAGTCTGTGTAGAAGTTGATGACGTAGGAATCGACGGTCCAGATGAAGGTGATGTCCAGGCTGGGGTCAAAGGATGCAGAGCACTGGAGAACCGTAGTGTCACCCACAACCACCTCAGTGTCAGACGGAGCCGCCGTGATTTTAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU39723 lncRNA downstream 16225 6841974 ~ 6843849 (-) True G26787
XR_006250660.1 lncRNA downstream 470873 6377116 ~ 6389201 (-) True LOC122342911
TU39386 lncRNA downstream 592660 6266832 ~ 6267414 (-) True G26556
TU39377 lncRNA downstream 607426 6207174 ~ 6252648 (-) False arhgef39
TU39373 lncRNA downstream 652565 6193389 ~ 6207509 (-) False arhgef39
TU39736 lncRNA upstream 476 6862723 ~ 6863382 (-) True G26796
TU39740 lncRNA upstream 21654 6883901 ~ 6956375 (-) True G26799
XR_006250751.1 lncRNA upstream 304559 7166806 ~ 7189549 (-) True LOC122343305
TU39779 lncRNA upstream 352087 7214334 ~ 7220911 (-) True si:dkey-261e22.4
TU39780 lncRNA upstream 457255 7319502 ~ 7319725 (-) True G26832
XM_043237094.1 mRNA downstream 66639 6792367 ~ 6793435 (-) True akap14
XM_043236394.1 mRNA downstream 76039 6776299 ~ 6784035 (-) True irf5
XM_043237696.1 mRNA downstream 101886 6756012 ~ 6758188 (-) True opn1sw1
XM_043237512.1 mRNA downstream 109825 6740893 ~ 6750249 (-) True mdm1
XM_043236564.1 mRNA upstream 71846 6934093 ~ 6940296 (-) False gxylt1b
XM_043236563.1 mRNA upstream 71846 6934093 ~ 6940296 (-) True gxylt1b
XM_043236565.1 mRNA upstream 72339 6934586 ~ 6940296 (-) False gxylt1b
XM_043236566.1 mRNA upstream 78199 6940446 ~ 6950897 (-) True yaf2
XM_043236513.1 mRNA upstream 89645 6951892 ~ 6954640 (-) True zcrb1
TU39663 other downstream 120479 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 498631 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 920075 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 946536 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 1006708 5850404 ~ 5853366 (-) True G26414
TU39958 other upstream 692868 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 1385664 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 1598259 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 2031937 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 2033545 8895792 ~ 8941271 (-) False LOC122343470

Expression Profile