RNA id: TU39780



Basic Information


Item Value
RNA id TU39780
length 224
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G26832
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 7319502 ~ 7319725 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTCCTGATTCAATTGTATGATGCAAAAATAACTATTGCacttgttatatatttatattataattatatataatgtattatattttgattgtttgacatttcattttttctccttttgtaattcttattattttattctaaaccTGTATTATTGTCAATCCCCCTCCTACTCAGCCGAAGATTAATCTTCTGAAACGCAGCCATAAACACGTAGGATCAAAAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU39779 lncRNA downstream 98591 7214334 ~ 7220911 (-) True si:dkey-261e22.4
XR_006250751.1 lncRNA downstream 129953 7166806 ~ 7189549 (-) True LOC122343305
TU39740 lncRNA downstream 363127 6883901 ~ 6956375 (-) True G26799
TU39728 lncRNA downstream 411007 6845559 ~ 6908495 (-) True G26790
TU39813 lncRNA upstream 53448 7373173 ~ 7373595 (-) True G26846
XR_006250789.1 lncRNA upstream 79941 7399666 ~ 7456641 (-) True LOC122343472
XR_006250790.1 lncRNA upstream 91600 7411325 ~ 7456641 (-) False LOC122343472
TU39864 lncRNA upstream 110369 7430094 ~ 7456598 (-) False LOC122343472
TU39965 lncRNA upstream 535024 7854749 ~ 7856511 (-) True G26956
XM_043236618.1 mRNA downstream 1447 7225509 ~ 7318055 (-) False LOC122342649
XM_043236619.1 mRNA downstream 1447 7225509 ~ 7318055 (-) False LOC122342649
XM_043236620.1 mRNA downstream 1447 7225509 ~ 7318055 (-) True LOC122342649
XM_043236379.1 mRNA downstream 98601 7214454 ~ 7220901 (-) False si:dkey-261e22.4
XM_043236378.1 mRNA downstream 98601 7214454 ~ 7220901 (-) False si:dkey-261e22.4
XM_043237539.1 mRNA upstream 141389 7461114 ~ 7469813 (-) True akr1b1.2
XM_043237541.1 mRNA upstream 141389 7461114 ~ 7469766 (-) False akr1b1.2
XM_043237972.1 mRNA upstream 150194 7469919 ~ 7477407 (-) False prdm4
XM_043237971.1 mRNA upstream 150194 7469919 ~ 7477404 (-) True prdm4
XM_043236515.1 mRNA upstream 161624 7481349 ~ 7494492 (-) False slc26a5
TU39663 other downstream 579907 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 958059 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 1379503 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 1405964 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 1466136 5850404 ~ 5853366 (-) True G26414
TU39958 other upstream 235390 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 928186 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 1140781 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 1574459 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 1576067 8895792 ~ 8941271 (-) False LOC122343470

Expression Profile