RNA id: XR_006250790.1



Basic Information


Item Value
RNA id XR_006250790.1
length 1053
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id LOC122343472
representative False

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 7399666 ~ 7456641 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCGTCCGCCAGGTGTCACCAAAACAACGTCCAAAGTCCTTTAAACGCTTTCCACGTGTTCACTGTTTACAGCAGCACCAGCGGCTCTTCAGAACAATAACTGAGACAAACTTCCAGCCCTGGAACCAATTAGAGCAGGAGGAGCCCCTGCACCCGTCCACGGGAGGCGCCTTCGGTGCGGAGACGGAGGCAGGTGCTACTGACGTTCCTCTGGAGAAGTAATCAGCGGCGCCTCTGTTCGAAGACAAGCAATGCGAAACACGAAAGCTACGGGAAACCGCTATCTTCACTCACCATTGGTCGCTTCTTCCATCCCACCCTTCCAGTTCTTAATCTCCCCTCATCTCGAGACGCAGGGCAACAGGTGATGCTTGGAGGTCACCATCTGTCACCCTGGCCAGATGAGCAGGCTTCTGGACGGAAAATGTTATCACTGAAATGGCAACATGTGGATTGAGAGAAGTTTTGGGAGATACAAGACAATTGGATCCCTGGAGAGAAAAAGGGCCCTATTAAATGGATAATTTTTTCCTTGCCGAAAACTATTCTCAGCAAGCTCTGAGTGGCATCGCTTTTAATGAGAAAACGAGATCCACAAAGTCAATAATCTTAATCAGGTAGAGCTATTTTGAGAATGATAAGGCTGAGAAGCAGGGGAATGTTAAAACCATTGacaattaataacatttaaaaggacTTGTAGAGCTGCAGTGGCTGGGAATGTTTTACAATTACCATGTTCATGAAATTAAATAGATGTTGTTGATGGAGTTACATGCAGTCATGGGGTTTCTGTACCTTTGGagtaatgaaattaaataagaagGAAAACCATGCCTGACTCGTGGGAGAAGCTTGCCcttttcaactttatttttgcacaatgatattctgattattattgattatttatttttgtgaaattagtTACATCTTCAATGTGAAATGTCCAGTAAGTGCCACTAACCATTTGTTAAAGTTTATCCAAAACAGATAAATGTGAATTTGGGAGTGTTTTATTAGGTTGGTTGTAgttgaaaattaaatatctgtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU39813 lncRNA downstream 37730 7373173 ~ 7373595 (-) True G26846
TU39780 lncRNA downstream 91600 7319502 ~ 7319725 (-) True G26832
TU39779 lncRNA downstream 190414 7214334 ~ 7220911 (-) True si:dkey-261e22.4
XR_006250751.1 lncRNA downstream 221776 7166806 ~ 7189549 (-) True LOC122343305
TU39740 lncRNA downstream 454950 6883901 ~ 6956375 (-) True G26799
TU39965 lncRNA upstream 398108 7854749 ~ 7856511 (-) True G26956
TU40056 lncRNA upstream 570899 8027540 ~ 8027742 (-) True G27031
TU40059 lncRNA upstream 574122 8030763 ~ 8034539 (-) False G27032
TU40060 lncRNA upstream 574122 8030763 ~ 8035012 (-) True G27032
TU40084 lncRNA upstream 664705 8121346 ~ 8121708 (-) True G27051
XM_043236618.1 mRNA downstream 93270 7225509 ~ 7318055 (-) False LOC122342649
XM_043236619.1 mRNA downstream 93270 7225509 ~ 7318055 (-) False LOC122342649
XM_043236620.1 mRNA downstream 93270 7225509 ~ 7318055 (-) True LOC122342649
XM_043236379.1 mRNA downstream 190424 7214454 ~ 7220901 (-) False si:dkey-261e22.4
XM_043237539.1 mRNA upstream 4473 7461114 ~ 7469813 (-) True akr1b1.2
XM_043237541.1 mRNA upstream 4473 7461114 ~ 7469766 (-) False akr1b1.2
XM_043237972.1 mRNA upstream 13278 7469919 ~ 7477407 (-) False prdm4
XM_043237971.1 mRNA upstream 13278 7469919 ~ 7477404 (-) True prdm4
XM_043236515.1 mRNA upstream 24708 7481349 ~ 7494492 (-) False slc26a5
TU39663 other downstream 671730 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 1049882 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 1471326 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 1497787 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 1557959 5850404 ~ 5853366 (-) True G26414
TU39958 other upstream 98474 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 791270 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 1003865 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 1437543 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 1439151 8895792 ~ 8941271 (-) False LOC122343470

Expression Profile