RNA id: TU40059


Basic Information

Item Value
RNA id TU40059
length 3777
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G27032
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8030763 ~ 8035012 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaacactgaattaattatattttaaaaaaaaatgtaagtgtatTGTACTTAGAGCCACTGATAAAGTTCAAGCACTGTCAGTAACTGTACACTGGAACCTGACGGTACGTGACAATTAAGTCATGCTGACTTCAGTTATGCTGCTTCCTTTAAACAAGCATTTTAACAAGTCTCAAAACTTTTATAATTTGTCTGACAATGCAAAAGGGAGAAAAGAACAAGAAACTGTGTGGGAGAGTGAGTATCGCCTAATTAAAAGTATCAGAAATCTTCCTCCATCAGCATGAGGGGGAATTAATGTGGGGCTGTTGGCACATGAAGTCAATGCTTCAGGCTTCCTGTCTCCAAACAGGCAAACAGGAGGTGCATTGCAGAGAGCCAGTTGCCTTGGTAACAACAACTGAGCCGCATGGCTTGCAAGCAGAAGCGCTAGTGAATTCTCAGGGGTGAAGCTAACTACAcctttaaagattaaatgttGACTCAACACAACAGCAAAACCAACTTACACAAGCTTACATTAGAAGCAACTACGAGATTCACCTTCGCCTTACAAATAGGTTCTTGCACTATAAATAAGAAATCATTTACGGAGGACATCGGTATGTGAAGACACGAATTACATTCTGTGCTTTCGGTGAACGCTTGAGGACACGCATCAATCAACAGCACATAATAATCATTTCCCTgtctgaatgttttattaagaCCAGAAGTTTTCCAAAGCCTCTTATACTGTATGTCCAGTTCAAAGGCGTCTGTCAGGGACGTGCTTCAAAATCTGATTCAATTTTAAGCAGACTTGTGTCTGTACGAGAGTCCATCCTACTGTAAAAGAACCAAATTAATTATCTATTTTCCGCATCTTCTATGCCGGTTTTGGAAGAATATCTGCAGATTTGAATGTGCAAACTAATCAGACCTAAAAGTACTAGAAATGAACACTTAGCTCCACAGTGTGCTAGTTACATGGACTagttttaacagtaaaatatgcACAGTTATATAAAACCAAGCTTAAATCAAGCCTAAACCTGACCTTGGAGTAAGTACACactgtaacaaagacacctACCAAAACTAATTGGCTACTGAAATATTTCGTCACATCAGAcgaaatattaataagcaagcATGGTATATTTACGAAAGTCTGTGAAATGCATGCCttgatataaaattaaactcAGTTTAAAGTTAGATATTGGTCTTTTAGTTGCTCGCCTTATTTACATGCAGTCGAAGCCACGTGGAAACAGCATTAATCATCGCAAGTTCTCACATATTTTTGCAAAACCCTAACATTAAAATTTGAACTTCACACTCATATTACAGGATTGCTTATTGAACTGTTATATAACAGCACATTTGCTGATGTTCGGTACAACAACActttacacatacagtatgatATTGCTTAAACGCACTTCTATTAACAGAATATAATAAGTATGTAGTGCAGATGAAGATTTAGGAATAGCTCCTATTTCTAATCCACAACCTCTATTCTGTGACTGAGAAACCACATGCCTGAACTTCACTGAAGTACCATTTTAACAATGCAGTGTATCAAGAGCAGTCACAGCTGTGGCCCTGTAGGCCTGAGCTGACAAACAGCTTTTGCAGCTATGAGGGTAAAATACAACAGCTCTACTATGATTTAGCCTCTCTCGCTTGTCTCTGTGTGCAAAAGATGATTTATGCCggtttctttgtctcccagcgCTGCCCTGGATAATATAATGTGGACAGGTTTGTCCTTCTCTGAGATATGATCTTGGTTTTCAGAGGCCAGGTTATGGAGATACGTCCGGAGATGAAAGAAGAGAAGGAAATTATGAGTCAGCCTGTCATGAAAATCTCCATCATTTTATGAAAGTGTGTCTGCACTGACTGATAGGTTAACACCACATTCttgaaaataaaggttccaattttctttttggtcaatgtcattaaattatatgaacCTCAGAtgtctttatatttaagaatGTACAAGTTGAAGTTGGAAAATTGGGAGAACATATAATgtgcagatatatatatatataaacaattaataacaaactgtctaatcttaagttattttaagtctttcttgctataaaaaaaatctaccattagcattaaaattaaaagtctaACAAAGTCACAAAGTTGAATATTTAAACCATTAGATCGtaagcaaatttatttttatgattatgtatGACTATAATGTTATACAATACATGACGCGCAGTGAATGAATCAGTATAATGTGACCACgatttgatattaaaatgaaggaacaaatgaataaatcacagaCCAAAACGGCTAAATTCTCAAGGAATGAATTCGTAAGCCATGGCTACGATATCTATTTGTCATGTTCAATTGACCAAGTCATTGCTTCATTCATGTAGGAATAATTTCATATATTCGCATATAGTGCAGCATTAGGAGCGTAAGATCTAGATGAGCGTGATAAGATAGTAAAAGTGTGAAGACTGTCTCTGTAAGTAGGTTATGCCCGAGGGTTTGCACAACCGTCTTGTCTGAAACTGCCTCTGAATTATGAGATCATTGCAACATCTGCCGGTTAGAGGGACTGACGCTGACGGacggccaggtgtgtgtgtgtacttactgtacaggtacacacacaggcTCACCGCACGCTGATGACAAATGAAAGCGGAAATGAAATGCAACTTGTATCATGAGATACCCGAATAGCTGTCTCAATATATTTACTCAGTCTGTGTGTCAGATTAAGCcagaaaatacattaattacagGAGGAGAGTCTCTCCAACTGTTCCAGCTGCTCATTTGTGGTCAGGAATGAGCCGCAGAAGATCATTGAGTTACACATAGATTACAAGTTcatgttacatatatattatgttaacatATTTCTGTTTAGTTATGTCAATATATTCTATTAGTTACACTGGCCCAGTAGTGCACAACACGACAAAATCTCCACAACACAACAAATCGCCAATAAACAATGCTCTGGACTAATTTAGATGTTTTGTGCTAATTCTGCCTTGTTGCActaattttgatttttattcaatGTGCTGTGCTAATTTCGTTGCGTTGCAACTTGTTTCCTTTGTGTTGTGCTAATTTTGTTATTGCGGCTTGCTTCTGTTGCTTTGGGCTAATTTTGTTGTTGTGGCTTGTTTACACTGTGATGCAAAAAAACCTGAACATTATTTCAAAGTGATTATTCTGTGAcatgatatttaatataaagcGTGACCTCCATAGCACACCTTCTTGCCTCGCTTCCAGTGTCCAGGGATTTAAGAGCTTCGGGCCGTTTTCAGAGCTTAGATTTGCTGATGACGGATAAGCCTTCAACCTCTCAGATCACTCACACTGGAGGACACAGTTGAGGGATGGGAATCTCCATATTTTCCAATGACCTGACCTGCTTTTGCCTCACAGCACAGAGCACATCTGCTGCCTTCATTGTCATTTATTGAATGGCTTGCTTGAAGCTACAGAGGTTaattaaacttatttcaaaaaccTATTTTTGCCACTAACACTCACGTGATGTGCTAATATCTCACTATCTATACCCTCTCTAGCTCTCTGTCCTGTTAGTTACTGCTTTGAGCCAGACTCATTGGTCTTCCTTCCAGATGGGATGGGCGGAAGGACTGGTTTAACGTTGGCACCTGGGCGGCCCGGGGAGGAAGGGAGCGTTGGGGAGACCCTCTCAGACACAGAGCGAGGGGCATCAGGGGTCAGGCCAGACTCCATGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40056 lncRNA downstream 3021 8027540 ~ 8027742 (-) True G27031
TU39965 lncRNA downstream 174252 7854749 ~ 7856511 (-) True G26956
XR_006250789.1 lncRNA downstream 574122 7399666 ~ 7456641 (-) True LOC122343472
XR_006250790.1 lncRNA downstream 574122 7411325 ~ 7456641 (-) False LOC122343472
TU39864 lncRNA downstream 574165 7430094 ~ 7456598 (-) False LOC122343472
TU40084 lncRNA upstream 86807 8121346 ~ 8121708 (-) True G27051
TU40083 lncRNA upstream 88575 8123114 ~ 8123860 (-) True G27050
TU40098 lncRNA upstream 91803 8126342 ~ 8126824 (-) True G27063
XR_006250547.1 lncRNA upstream 133734 8168273 ~ 8169587 (-) True LOC122342218
TU40106 lncRNA upstream 165638 8200177 ~ 8200701 (-) False LOC122342531
XM_043236857.1 mRNA downstream 115156 7859957 ~ 7915607 (-) False chchd3a
XM_043236791.1 mRNA upstream 78430 8112969 ~ 8116452 (-) True mest
XM_043236790.1 mRNA upstream 78430 8112969 ~ 8116442 (-) False mest
XM_043236783.1 mRNA upstream 97257 8131796 ~ 8158356 (-) False atp2b1a
XM_043236787.1 mRNA upstream 97257 8131796 ~ 8158312 (-) False atp2b1a
XM_043236784.1 mRNA upstream 97257 8131796 ~ 8157442 (-) True atp2b1a
TU39958 other downstream 472310 7555115 ~ 7558453 (-) True G26951
TU39663 other downstream 1291168 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 1669320 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 2090764 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 2117225 5909473 ~ 5913538 (-) True G26462
TU40263 other upstream 213372 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 425967 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 859645 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 861253 8895792 ~ 8941271 (-) False LOC122343470
XR_006250787.1 other upstream 861253 8895792 ~ 8941271 (-) False LOC122343470

Expression Profile