RNA id: TU40125



Basic Information


Item Value
RNA id TU40125
length 949
lncRNA type inter_gene
GC content 0.28
exon number 2
gene id G27084
representative False

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8278559 ~ 8331302 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGTAAGAAATATGgtttattcaaataaagatGAACAAACTGCTttggcatttgtttttttttaacaaaataaaacaacaaatcagGGAACTTACAACTTCTACAACAGTCTGCCAAAGTTACTGTAATCTCACGGCTCAATAATTTGACTAACATGGTGATGATGTGAAATGGTGTattgaatacataaaaaaaattcaatgtgGTTTACCATAGAATTGAAAGCAATCTCTGTTACAAAATAAGATGAACTGCATGCAGATAAAATATGGTATAAATGTTGGCAGAGTTAAGAAATTCAAGCTGATACTAATTTGCTATTAATACAACATTTTGCCACTGAAATTCCtcagttaaataataataaaaaaacctttagaTTTATTTAGCAGTTAGCTAAACCTCATCAAATTCATTCAGTGTccagcattttttctttttttcagttttgcgtGCATTTCAATTTCAGATGAATTCTTGATATCCTTCAACATCACTgcacatttagtcattttatataCAACTAAGATAGTTATGTTCCATAATGTGTACTCTAAACAATCTAATGTCCTTACCGGCAGGTTTATTAATAACATGATTACAATTGTGACTGATAAGGTATTTAACATGCGCTTAGATGACATATAGTGCTGCTTCGTATAGAGTGCACACTGGGCTATTCACAATTTGCACAAATATGTCTCTCATTTAAATGGGAATATTTCATCTAATTCATCTAATACTCTTTATACAGTACCATACAAGACTGAAATTTTATGTGCCAGATTTGAAGACCCCAGACTACTGCTgccctttatatatatatatatatatatatatatacacatatatatatatatatatatatatatatatatatacacacatatatatatatacacacacacacatatatatatatatatatatatatatatatatacatata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU40101 lncRNA upstream 102760 8175465 ~ 8175799 (+) True G27066
XR_006250640.1 lncRNA upstream 146231 8129161 ~ 8132328 (+) True LOC122342736
TU40014 lncRNA upstream 152565 8125259 ~ 8125994 (+) True G26994
XR_006250639.1 lncRNA upstream 154685 8115888 ~ 8123874 (+) True LOC122342735
TU39923 lncRNA upstream 641987 7590623 ~ 7636572 (+) False LOC122342925
XR_006250796.1 lncRNA downstream 43352 8374654 ~ 8377309 (+) True LOC122343529
TU40165 lncRNA downstream 140373 8471675 ~ 8505096 (+) True G27121
TU40166 lncRNA downstream 151594 8482896 ~ 8483814 (+) False stmp1
TU40170 lncRNA downstream 156684 8487986 ~ 8491938 (+) True spx
TU40214 lncRNA downstream 421136 8752438 ~ 8752849 (+) True G27162
XM_043236209.1 mRNA upstream 23714 8252084 ~ 8254845 (+) True si:dkeyp-38g8.5
XM_043236789.1 mRNA upstream 165650 8103345 ~ 8112909 (+) True copg2
XM_043237530.1 mRNA upstream 175755 8101251 ~ 8102804 (+) True ucn3l
XM_043237525.1 mRNA upstream 177810 8041437 ~ 8100749 (+) True col7a1l
XM_043237933.1 mRNA downstream 129146 8460448 ~ 8474705 (+) True pkp2
XM_043237679.1 mRNA downstream 144404 8475706 ~ 8482653 (+) False tcp11l2
XM_043237680.1 mRNA downstream 144426 8475728 ~ 8482653 (+) True tcp11l2
XM_043238049.1 mRNA downstream 151588 8482890 ~ 8483831 (+) True stmp1
XM_043238047.1 mRNA downstream 152671 8483973 ~ 8487631 (+) True golt1ba
TU40115 other upstream 29336 8247912 ~ 8249223 (+) True G27079
TU40013 other upstream 140120 8137738 ~ 8138439 (+) True G26993
XR_006250729.1 other upstream 184058 8041432 ~ 8094501 (+) False col7a1l
XR_006250662.1 other upstream 720070 7532920 ~ 7558489 (+) False ube2h
XR_006250548.1 other downstream 202514 8533816 ~ 8542712 (+) False etnk1
TU40537 other downstream 837474 9168776 ~ 9182232 (+) False G27360
XR_006250785.1 other downstream 1050240 9381542 ~ 9394728 (+) False cfap54
TU40764 other downstream 1246013 9577315 ~ 9578574 (+) True G27508
TU40736 other downstream 1256017 9587319 ~ 9590318 (+) True G27490

Expression Profile